View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9611_low_2 (Length: 355)
Name: NF9611_low_2
Description: NF9611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9611_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 1165890 - 1165571
Alignment:
| Q |
21 |
tcaatgaaattattatgcagtaaaacacnnnnnnnaagccaagttacatgcacacatctgaaagcagcttttcgaagacatgatcactttt-gttcagaa |
119 |
Q |
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| T |
1165890 |
tcaatgaaattattatgcagtaaaacactttttttaagccaagttacatgcacacatctgaaagcagcttttcgaagacatgatcactttttgttcagaa |
1165791 |
T |
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| Q |
120 |
acatgcactacaatgttacgttatttttcatgaaaatta-gaaaaatcaaggacatgacttctcaagtaaaactggaacatgagcatgaacatttagctt |
218 |
Q |
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| T |
1165790 |
acatgcactacaatgttacgttgtttttcatgaaaattaagaaaaatcaaggacatgacttctcaagtaaaactggaacatgagcatgaacatttagctt |
1165691 |
T |
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| Q |
219 |
catataagttaagagaaaatgccatatatgatgagttgcctaatatatgtaattttgatttctgaaagacttggctttcaaaaaacttaggcacaagaaa |
318 |
Q |
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| T |
1165690 |
catataagttaagagaaaatgccatatatgatgagctgcctaatatatgtaattttgatttctgaaagacttggctttca-aaaacttaggcacaagaaa |
1165592 |
T |
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| Q |
319 |
atcaagggttcggcatgaaat |
339 |
Q |
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| T |
1165591 |
atcaagggttcggcatgaaat |
1165571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 1710752 - 1710690
Alignment:
| Q |
261 |
atatatgtaattttgatttctgaaagacttggctttcaaaaaacttaggcacaagaaaatcaag |
324 |
Q |
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| T |
1710752 |
atatgtgtaattctgatttctgaaagacttggctt-caaaaaacttaggcacaagaaaatcaag |
1710690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 1711416 - 1711352
Alignment:
| Q |
151 |
gaaaattagaaaaatcaaggacatgacttctcaagtaaaactggaacatgagcatgaacatttag |
215 |
Q |
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| T |
1711416 |
gaaaattagaaaaatcaaggatataacttctcaagtacaactggaagataagcatgaacatttag |
1711352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 48691893 - 48691960
Alignment:
| Q |
179 |
tctcaagtaaaactggaacatgagcatgaacatttagcttcatataagttaagagaaaatgccatata |
246 |
Q |
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| T |
48691893 |
tctcaagtaaaactggaacacgagcttgaacgtttatcttcaaataaatgaagagaaaatggcatata |
48691960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 1711539 - 1711475
Alignment:
| Q |
68 |
atgcacacatctgaaagcagcttttcgaagacatgatcacttttgttcagaaacatgcactacaa |
132 |
Q |
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| T |
1711539 |
atgcacacacccggaagcagcttttttaagacatcatctcttttgttgagaaacatgcaatacaa |
1711475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 325
Target Start/End: Original strand, 1523929 - 1524184
Alignment:
| Q |
57 |
agccaagttacatgcacacatctgaaagcagcttttcgaagacatgatcacttttgttcagaaacatgcactacaatgtt-acgttatttttcatgaaaa |
155 |
Q |
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||||||||||||||||||||| || || |||||||| ||||||||||| ||||||||| |||||||||| ||||| || | |||||||| || ||||| |
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| T |
1523929 |
agccaagttacatgcacacatttgtaaacagctttttgaagacatgattgcttttgttc-gaaacatgcagcacaatatttaagttattttgcaggaaaa |
1524027 |
T |
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| Q |
156 |
ttagaaaaatcaaggacatgactt---ctcaagtaaaactggaacatgagcatgaacatttagc-ttcatataagttaagagaaaatgccatatatgatg |
251 |
Q |
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| T |
1524028 |
t---------caaggacatgacttgttctcaagtaaaactggaacatgagcatgaacattaatctttcagataaatgaagagaaaatgccatataggatt |
1524118 |
T |
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| Q |
252 |
agttgcctaatatatgtaattttgatttctgaaagacttggctttcaaaaaacttaggcacaagaaaatcaagg |
325 |
Q |
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||||| || ||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
1524119 |
agttgtctgatata--------tgatttctgagagacttggcttccaaaaaacttaggcacaggaaaatcaagg |
1524184 |
T |
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