View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9611_low_3 (Length: 338)
Name: NF9611_low_3
Description: NF9611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9611_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 3542424 - 3542752
Alignment:
| Q |
1 |
aaattagaacaatgataaatattcaatgaacaccaattaaactaccgtctaccgataatatttacggataactcgtcaaagtattttcgatactcgnnnn |
100 |
Q |
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||||||||||||| ||||||||||||| ||||| || | || ||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
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| T |
3542424 |
aaattagaacaatcataaatattcaattaacactaactgaattaccgtctaccaataatatttacgattaactcgtcaaagtattttcgacactcgtttt |
3542523 |
T |
|
| Q |
101 |
nnncttatcaacttggtcaacctatgannnnnnnnc-cctcctataataataatcatcattaaatatcaaatactttatatcatatgattctatcctatc |
199 |
Q |
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| T |
3542524 |
tttcttatcaacttggtcaacctatcttcttttttttcctcctataataataatcatcattaaatatcatatactttatatcatatgatcctatcctatc |
3542623 |
T |
|
| Q |
200 |
acaaggaaaca----------caaccttttcttcttaaaaaccaatcaattcattcattatcttccaacacaacacaaacacagaacaaaacatcatcaa |
289 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542624 |
acaaggaaacacaacacaacacaaccttttcttcttaaaaaccaatcaattcattcattatcttccaacacaacacaaacacagaacaaaacatcatcaa |
3542723 |
T |
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| Q |
290 |
accttgccgttgatggaaaattgtcttac |
318 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3542724 |
accttgccgttgatggaaaattgtcttac |
3542752 |
T |
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