View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9611_low_4 (Length: 312)
Name: NF9611_low_4
Description: NF9611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9611_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 4359552 - 4359321
Alignment:
| Q |
24 |
tacgtccatgattttttaaagtcacgtgacattttcatttagactacacaatctcacgtgagattcaactacaacctcttaactcttaaggcaacacaaa |
123 |
Q |
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| T |
4359552 |
tacgtccatgattttttatagtcacgtgacattttcatttaaactacacaatctcacgtgagattcaactacaacctcttaactcttaaggcaacacaaa |
4359453 |
T |
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| Q |
124 |
cccacccacccaagcactaaataataaaaccacgtttttctttctccc--ctttccc--------atatatatatagacccattacccttcctcctcaat |
213 |
Q |
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| T |
4359452 |
cccacccacccaagcactaaataataaaaccacgtttttctttctcccctctttcccatatatatatatatatatagacccattacccttcctcctcaat |
4359353 |
T |
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| Q |
214 |
tcatccctttctttgtgtttcaatatctctct |
245 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
4359352 |
tcaaccctttctttgtgtttcaatatctctct |
4359321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4352866 - 4352977
Alignment:
| Q |
181 |
atatatatagacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctctctccnnnnnnntaatctctctagctatacctcttt |
280 |
Q |
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||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4352866 |
atatatatacacccatttcccttcctcttcaattcatccctttctttgtgtttcaatatctctctc-caaaaaataaaatctctctagctatacctcttt |
4352964 |
T |
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| Q |
281 |
ctctctttcaaat |
293 |
Q |
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|| || ||||||| |
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| T |
4352965 |
ctttccttcaaat |
4352977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 4349463 - 4349507
Alignment:
| Q |
179 |
atatatatatagacccattacccttcctcctcaattcatcccttt |
223 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
4349463 |
atatatatatatacccatcacccttcctcttcaattcatcccttt |
4349507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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