View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9611_low_6 (Length: 275)
Name: NF9611_low_6
Description: NF9611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9611_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 353638 - 353896
Alignment:
| Q |
1 |
atggttgatcaggatatcatgcctagatacaaaacttgccgtttgctcttggattaagtcaaacagaaaaatatgtatcaagctgttgagaaaattgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353638 |
atggttgatcaggatatcatgcctagatacaaaacttgccgtttgctcttggattaagtcaaacagaaaaatatgtatcaagctgttgagaaaattgaat |
353737 |
T |
|
| Q |
101 |
ttcttatgaataaactttatatgtatgtatgtttctaaatataatagaaaactcactcaatcacattccaagaattttaaagacttggctatcatgtcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353738 |
ttcttatgaataaactttatatgtatgtatgtttctaaatataatagaaaactcactcaatcacattccaagaattttaaagacttggctatcatgtcag |
353837 |
T |
|
| Q |
201 |
tatcgacagcttgtttggttggagagaagaaagtgggaagagagaaagaaacatgtaag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353838 |
tatcgacagcttgtttggttggagagaagaaagtgggaagagagaaagaaacatgtaag |
353896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10580415 - 10580533
Alignment:
| Q |
1 |
atggttgatcaggatatcatgcctagatacaaaacttgccgtttgctcttggattaagtcaaacagaaaaatatgtatcaagctgttgagaaaattgaat |
100 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10580415 |
atggttgatcaagatatcgtgcctagatacaaaacttgccgtttgctcttggatgaagtcaaacagaaaaatatgtatcaagctgttgacaaaattgatg |
10580514 |
T |
|
| Q |
101 |
ttcttatgaataaacttta |
119 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
10580515 |
ttcttatgaagaaacttta |
10580533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 24578822 - 24579091
Alignment:
| Q |
1 |
atggttgatcaggatatcatgcctagatacaaaacttgccgtttgctcttggattaagtcaaacagaaaaatatgtatcaagctgttgagaaaattgaat |
100 |
Q |
| |
|
|||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
24578822 |
atggctgatcaagatatcgtgcctagatacaaaacttgccgtttgctcttggatgaagtcaaacagaaaaatatgcatctcgctgttgtgaaaattgagg |
24578921 |
T |
|
| Q |
101 |
ttcttatgaataaactttatat---------------gtatgtatgtttctaaatataatagaaaactcactcaatcacattccaagaattttaaagact |
185 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| |||||||| |||| |||||||||||||||||| |||| | ||||| |
|
|
| T |
24578922 |
ttcttatgaagaaactttaaatgtgggagtctctttggtatgtatgtttctgaatataatcgaaa----actcaatcacattccaagtatttgagagact |
24579017 |
T |
|
| Q |
186 |
tggctatcatgtcagtatcgacagcttgtttggttggagagaagaaagtgggaagagagaaagaaacatgtaag |
259 |
Q |
| |
|
||| |||||| ||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24579018 |
tggttatcatctcagtctcggcatcttgtttggttggagaggagaaagtgggaagagagaaagaaacatgtaag |
24579091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University