View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9611_low_9 (Length: 225)

Name: NF9611_low_9
Description: NF9611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9611_low_9
NF9611_low_9
[»] chr1 (62 HSPs)
chr1 (1-220)||(11891906-11892125)
chr1 (1-220)||(11882720-11882939)
chr1 (1-220)||(11905517-11905736)
chr1 (1-176)||(52818440-52818615)
chr1 (4-153)||(11880174-11880323)
chr1 (4-153)||(11902674-11902823)
chr1 (97-153)||(11905325-11905381)
chr1 (1-159)||(11882480-11882638)
chr1 (1-159)||(11891714-11891872)
chr1 (4-159)||(11902578-11902733)
chr1 (97-159)||(11882384-11882446)
chr1 (97-159)||(11891618-11891680)
chr1 (97-159)||(52818601-52818663)
chr1 (4-153)||(11880078-11880227)
chr1 (4-152)||(11902770-11902918)
chr1 (99-159)||(11905279-11905339)
chr1 (1-56)||(11882432-11882487)
chr1 (1-56)||(11891666-11891721)
chr1 (103-153)||(11888193-11888243)
chr1 (103-153)||(11888241-11888291)
chr1 (103-153)||(11888289-11888339)
chr1 (103-153)||(11888337-11888387)
chr1 (103-153)||(11888385-11888435)
chr1 (103-153)||(11888433-11888483)
chr1 (103-153)||(11888481-11888531)
chr1 (103-153)||(11888529-11888579)
chr1 (103-153)||(11888577-11888627)
chr1 (103-153)||(11888625-11888675)
chr1 (103-153)||(11888673-11888723)
chr1 (103-153)||(11888721-11888771)
chr1 (103-153)||(11888769-11888819)
chr1 (103-153)||(11888817-11888867)
chr1 (103-153)||(11888865-11888915)
chr1 (103-153)||(11888913-11888963)
chr1 (103-153)||(11888961-11889011)
chr1 (103-153)||(11889009-11889059)
chr1 (103-153)||(11889057-11889107)
chr1 (103-153)||(11889105-11889155)
chr1 (103-153)||(11889153-11889203)
chr1 (103-153)||(11889201-11889251)
chr1 (103-153)||(11889249-11889299)
chr1 (103-153)||(11889297-11889347)
chr1 (103-153)||(11889345-11889395)
chr1 (103-153)||(11889393-11889443)
chr1 (103-153)||(11889441-11889491)
chr1 (103-153)||(11889489-11889539)
chr1 (1-159)||(11905325-11905483)
chr1 (1-53)||(11882336-11882388)
chr1 (1-53)||(11891570-11891622)
chr1 (97-153)||(52818799-52818855)
chr1 (1-56)||(11882672-11882727)
chr1 (7-62)||(52818842-52818897)
chr1 (97-159)||(11882336-11882398)
chr1 (97-159)||(11882432-11882494)
chr1 (97-159)||(11891570-11891632)
chr1 (97-159)||(11891666-11891728)
chr1 (97-159)||(11905469-11905531)
chr1 (103-149)||(52818851-52818897)
chr1 (1-47)||(52819097-52819143)
chr1 (100-153)||(11889630-11889683)
chr1 (103-143)||(11889537-11889577)
chr1 (103-159)||(11889777-11889833)
[»] chr4 (1 HSPs)
chr4 (13-57)||(24482211-24482255)
[»] scaffold1918 (1 HSPs)
scaffold1918 (4-53)||(19-68)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 62)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11891906 - 11892125
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891906 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctc 11892005  T
Q  101 cctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagc 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892006 ccaactactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagc 11892105  T
Q  201 ttacatctgtgcttctccac 220  Q
    |||||||| |||||||||||    
T  11892106 ttacatctatgcttctccac 11892125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11882720 - 11882939
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  11882720 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttaccactatcaaagtcctcctccaccatctcccatttctcatcctc 11882819  T
Q  101 cctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagc 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |    
T  11882820 cctactactacaaatcccctccaccaccatcgccgtctcctccacctccttaccactatgtgagtcctcccccaccagtaaagtcacctccaccaccaac 11882919  T
Q  201 ttacatctgtgcttctccac 220  Q
    ||| |||| |||||| ||||    
T  11882920 ttatatctatgcttcaccac 11882939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11905517 - 11905736
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11905517 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctc 11905616  T
Q  101 cctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagc 200  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||     
T  11905617 cctactactacaaatcccctccaccaccgtctccatctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccatcagt 11905716  T
Q  201 ttacatctgtgcttctccac 220  Q
    |||| | | |||||||||||    
T  11905717 ttacgtttatgcttctccac 11905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 52818615 - 52818440
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctc 100  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| |||    
T  52818615 cctccttactattacaagtcacctccacctccatctccatctccaccacctccttattactatcaaagtcctcctccaccatctcccactcctcatactc 52818516  T
Q  101 cctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattacgtgagtcctcccccacc 176  Q
    ||||| ||||||||||||||||||||||| || | |||||||||||||| |||||||| |||||||| ||||||||    
T  52818515 cctaccactacaaatcccctccaccaccaacggcgtctcctccacctccttaccattatgtgagtccccccccacc 52818440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 11880174 - 11880323
Alignment:
Q  4 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 103  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| || ||  ||||  ||  ||||||||| |||||||| ||| | | | | || |    
T  11880174 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccgtacacctt 11880273  T
Q  104 actactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    |||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880274 actattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 11902674 - 11902823
Alignment:
Q  4 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 103  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| || ||  | ||  ||  ||||||||| |||||||| ||| | | | | || |    
T  11902674 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccgtacacctt 11902773  T
Q  104 actactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    |||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11902774 actattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11902823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 11905325 - 11905381
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||    
T  11905325 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatac 11905381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11882480 - 11882638
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttct-catcct 99  Q
    |||||||||||||||||||| || ||||| ||||| ||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||   | || |||||     
T  11882480 cctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatctcctccatcc- 11882578  T
Q  100 ccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    || || ||||||||||| || ||||||||||| ||||| || || ||||| ||| |||||    
T  11882579 ccatattactacaaatctccaccaccaccatcaccatccccaccccctccctactattac 11882638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11891714 - 11891872
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttct-catcct 99  Q
    |||||||||||||||||||| || ||||| ||||| ||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||   | || |||||     
T  11891714 cctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatctcctccatcc- 11891812  T
Q  100 ccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    || || ||||||||||| || ||||||||||| ||||| || || ||||| ||| |||||    
T  11891813 ccatattactacaaatctccaccaccaccatcaccatccccaccccctccctactattac 11891872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 11902578 - 11902733
Alignment:
Q  4 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 103  Q
    |||||||||||||| ||||| ||||| || || |||||||| ||||| || ||  | ||  ||  ||||||||| |||||||| ||| | ||| | || |    
T  11902578 ccttactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccatacacctt 11902677  T
Q  104 actactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    |||| |||||||| || |||||||| || |||||||||||||| |||||| |||||    
T  11902678 actattacaaatctcccccaccaccttcaccatctcctccaccaccatactattac 11902733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11882384 - 11882446
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11882384 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11891618 - 11891680
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11891618 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11891680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 52818663 - 52818601
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||||    
T  52818663 cctccctactactacaaatcacctccaccaccatccccgtcacctccacctccttactattac 52818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 11880078 - 11880227
Alignment:
Q  4 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 103  Q
    |||||||||||||| ||||| || || || || |||||||| ||||| || ||  ||||  ||  ||||||||| |||||||| ||| | ||| | || |    
T  11880078 ccttactattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccatacacctt 11880177  T
Q  104 actactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    |||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880178 actattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 11902770 - 11902918
Alignment:
Q  4 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 103  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| || ||  ||||  ||   |||||||  |||||||||||| | ||| | || |    
T  11902770 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatcccctcctcatccatctcccattccccatacacctt 11902869  T
Q  104 actactacaaatcccctccaccaccatcgccatctcctccacctccata 152  Q
    |||| |||| ||| || |||||||| || || ||||||||||| |||||    
T  11902870 actattacacatctcccccaccaccttcaccgtctcctccaccaccata 11902918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 11905279 - 11905339
Alignment:
Q  99 tccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||||||| |||||||| |||||||||||||||||||| || |||||||| ||| |||||    
T  11905279 tccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattac 11905339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11882432 - 11882487
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 56  Q
    ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  11882432 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcctta 11882487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11891666 - 11891721
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 56  Q
    ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  11891666 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcctta 11891721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888193 - 11888243
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888193 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888241 - 11888291
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888241 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888289 - 11888339
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888289 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888337 - 11888387
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888337 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888385 - 11888435
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888385 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888433 - 11888483
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888433 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888481 - 11888531
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888481 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888529 - 11888579
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888529 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888577 - 11888627
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888577 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888625 - 11888675
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888625 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888673 - 11888723
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888673 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888721 - 11888771
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888721 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888769 - 11888819
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888769 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888817 - 11888867
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888817 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888865 - 11888915
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888865 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888913 - 11888963
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888913 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11888961 - 11889011
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888961 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889009 - 11889059
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889009 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889057 - 11889107
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889057 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889105 - 11889155
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889105 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889153 - 11889203
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889153 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889201 - 11889251
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889201 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889249 - 11889299
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889249 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889297 - 11889347
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889297 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889345 - 11889395
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889345 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889393 - 11889443
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889393 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889441 - 11889491
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889441 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 11889489 - 11889539
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889489 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11905325 - 11905483
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctc 100  Q
    ||||| |||||||||||||| || ||||| ||||| ||||| || |||||||| ||  ||||  |||| || ||||| || ||||||  | ||| ||| |    
T  11905325 cctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatactactacaaaagcccccctccaccttctccctctcctcctcccc 11905424  T
Q  101 cctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    | || ||||||||||| || ||||||||||| ||||| || || ||||| ||| |||||    
T  11905425 catattactacaaatctccaccaccaccatcaccatcaccaccccctccctactattac 11905483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11882336 - 11882388
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctcc 53  Q
    ||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  11882336 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11891570 - 11891622
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctcc 53  Q
    ||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  11891570 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11891622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 52818855 - 52818799
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||    
T  52818855 cctccttattactacaaatcacctccaccaccaaccccatcacctccacctccatac 52818799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11882672 - 11882727
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 56  Q
    |||||||||||||||||||| || |||||||| || ||||| || |||||||||||    
T  11882672 cctccttactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 52818897 - 52818842
Alignment:
Q  7 tactattacaaatctcccccacctccatctccatctccaccacctccttatcacta 62  Q
    ||||||||| |||| || ||||| ||||| ||||||||||||||||||||| ||||    
T  52818897 tactattaccaatcccctccaccaccatcaccatctccaccacctccttattacta 52818842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11882336 - 11882398
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882336 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11882432 - 11882494
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882432 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattac 11882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11891570 - 11891632
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891570 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11891632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11891666 - 11891728
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891666 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattac 11891728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11905469 - 11905531
Alignment:
Q  97 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||||||||| |||||||| ||||||||||| || ||||| || |||||||| ||| |||||    
T  11905469 cctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattac 11905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 52818897 - 52818851
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctcc 149  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||||||    
T  52818897 tactattaccaatcccctccaccaccatcaccatctccaccacctcc 52818851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 52819143 - 52819097
Alignment:
Q  1 cctccttactattacaaatctcccccacctccatctccatctccacc 47  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  52819143 cctccatactattacaaatctcccccaccgccatcaccatccccacc 52819097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 11889630 - 11889683
Alignment:
Q  100 ccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 153  Q
    ||||||||||| ||||| || |||||||| || |||||||||||||| ||||||    
T  11889630 ccctactactataaatcacccccaccaccttcaccatctcctccaccaccatac 11889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 11889537 - 11889577
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctcc 143  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  11889537 tactactacaaatccccacctccaccatcgccttctcctcc 11889577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 11889777 - 11889833
Alignment:
Q  103 tactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 159  Q
    ||||| ||||| ||||| |||||||| || |||||||||||||| |||||| |||||    
T  11889777 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactattac 11889833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 24482255 - 24482211
Alignment:
Q  13 tacaaatctcccccacctccatctccatctccaccacctccttat 57  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  24482255 tacaaatctccaccaccaccatctccatcaccaccacctccttat 24482211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 68 - 19
Alignment:
Q  4 ccttactattacaaatctcccccacctccatctccatctccaccacctcc 53  Q
    |||||||||||||||||||| ||||| |||||||| || || ||||||||    
T  68 ccttactattacaaatctccaccaccaccatctccctcacctccacctcc 19  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University