View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_high_1 (Length: 690)

Name: NF9612A_high_1
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_high_1
NF9612A_high_1
[»] chr3 (1 HSPs)
chr3 (1-690)||(53096634-53097323)


Alignment Details
Target: chr3 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 690
Target Start/End: Original strand, 53096634 - 53097323
Alignment:
Q  1 atcgagtttggagttgcaaatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagnnnnnnnntccatcgaatttggatgagcag 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  53096634 atcgtgtttggagttgcaaatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagaaaaaaaatccatcgaatttggatgagcag 53096733  T
Q  101 aaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagcattagttgcatgcgtcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53096734 aaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagcattagttgcatacgtcg 53096833  T
Q  201 agcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatactttagtcatcaaccaagtaagaaaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  53096834 agcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatgctttagtcatcacccaagtaagaaaaat 53096933  T
Q  301 cactgcttgtaacaaccaacgagcaaaattctgtcctcacataccgttttctctttggtacttgattatatgttgttcttgcttacaaccaattactccg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  53096934 cactgcttgtaacaaccaacgagcaaaattctgtcctcacataccgttttctctttggtacttgattatatgttgttcttgcttacaaccaatgcctccg 53097033  T
Q  401 acctgaaacgcaagttgataaataagataccagtcatactagcgctagcttgtaaaaacaagagttctaaacaactaccgtctcatactccacttctact 500  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53097034 acctgaaacgcaagttgataaataagacaccagtcatactagcgctagcttgtaaaaacaagagttctaaacaactaccgtctcatactccacttctact 53097133  T
Q  501 tttcccccaatatgtgaaaattgtgattctgtggacacatttaatctgcaatatgatgacaaaacacaataaataaatatgaaaaagaatttgaaaatag 600  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53097134 tttcccccaatatgtgaaaattgcgattctgtggacacatttaatctgcaatatgatgacaaaacacaataaataaatatgaaaaagaatttgaaaatag 53097233  T
Q  601 agatttcacacaatgcaacttaaaaactacacaccccatttcaatagacaattcagagtcatgcacttcaactttgcaaccattttcact 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53097234 agatttcacacaatgcaacttaaaaactacacaccccatttcaatagacaattcagagtcatgcacttcaactttgcaaccattttcact 53097323  T

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