View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_high_12 (Length: 407)

Name: NF9612A_high_12
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_high_12
NF9612A_high_12
[»] chr6 (3 HSPs)
chr6 (115-407)||(27171422-27171704)
chr6 (116-407)||(27169586-27169881)
chr6 (9-49)||(27171770-27171810)
[»] chr7 (10 HSPs)
chr7 (116-407)||(2572297-2572589)
chr7 (115-407)||(2594557-2594852)
chr7 (115-407)||(10304677-10304972)
chr7 (115-407)||(2572915-2573210)
chr7 (116-407)||(2592956-2593250)
chr7 (116-378)||(2602146-2602410)
chr7 (169-407)||(10303130-10303371)
chr7 (261-372)||(2615815-2615926)
chr7 (116-183)||(2615687-2615755)
chr7 (9-49)||(2594918-2594959)
[»] chr1 (3 HSPs)
chr1 (116-407)||(22193485-22193780)
chr1 (120-364)||(22229572-22229819)
chr1 (217-372)||(22238531-22238685)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 115 - 407
Target Start/End: Complemental strand, 27171704 - 27171422
Alignment:
Q  115 taattatcagtataaacatgcttacaggttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatc 214  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27171704 taattatcagtataaacatgcttacaggttgtatcattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatc 27171605  T
Q  215 ta---gatattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttgt 311  Q
    ||   ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27171604 tagttgatattgcacaacctttttagtttcatttttctt-aaaaaataatttttgacttgtgttttaatacagcgatgattaacataactacctatttgt 27171506  T
Q  312 taattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    ||            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27171505 ta------------ttgagcaataggaattttagggttctcattatgagaagataaaccttctttacttgatcaacttgttattgctattagatca 27171422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 116 - 407
Target Start/End: Original strand, 27169586 - 27169881
Alignment:
Q  116 aattatcagta-taaacatgcttacagg-ttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaat 213  Q
    ||||||||||| || |||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||  |||| ||||||||  |||||||    
T  27169586 aattatcagtaatatacatgcttacggggttgtatcattaatctttgctaaatatttgtttccataattgcatgaattataacaattgaatcggaaaaat 27169685  T
Q  214 ctag---atattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttg 310  Q
    ||||   ||||||||||||||||| | |||||||||||||       ||||||||||||||||||||||| ||| ||||||||  |||||||||||||||    
T  27169686 ctagttgatattgcacaaccttttcaatttcatttttcttagaaaa-taatttttgacttgtgttttaattcagtgatgattaagataactacctatttg 27169784  T
Q  311 ttaattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||  |||||||||  | |||||||||||    
T  27169785 ttaattctttcattgtttagcaataggaattttagggttctgattatgagaagacaaaccttgtttacttggccaacttgttgattctattagatca 27169881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27171810 - 27171770
Alignment:
Q  9 aatgaagatgtatagtggaggaggctgaacaaggtgtagtt 49  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27171810 aatgaagatgtatagtggaggaggctgaacaaggtgtagtt 27171770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 116 - 407
Target Start/End: Original strand, 2572297 - 2572589
Alignment:
Q  116 aattatcagtataaacatgcttacagg-ttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatc 214  Q
    ||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||| ||||||||||||| ||||| ||||| || |||||||||    
T  2572297 aattatcagtataaacatgcttacagggttgtatcattaatctctgctaaatatttgtttcaataattgcatgaataataacaattggatcagaaaaatc 2572396  T
Q  215 tag---atattgcacaacctttttagtttcatttttcttnnnnnnntaat-ttttgacttgtgttttaatacagcgatgattagcataactacctatttg 310  Q
    |||   |||||| |||||||||| |||||||||||||||        ||| ||||| ||||||||||||| || |||||||||  |||||||||||||||    
T  2572397 tagttgatattgaacaaccttttcagtttcatttttcttagaa----aatattttgtcttgtgttttaattcaccgatgattaatataactacctatttg 2572492  T
Q  311 ttaattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
     ||||||||||||| ||||||||||||||||||| |||||| |||||||||||| || |||| ||||| ||  |||||||||  |||||||||||||    
T  2572493 ctaattctttcattatttagcaataggaattttatggttctgattatgagaagacaacccttatttacttggccaacttgttgctgctattagatca 2572589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 115 - 407
Target Start/End: Complemental strand, 2594852 - 2594557
Alignment:
Q  115 taattatcagtataaacatgcttaca-ggttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaat 213  Q
    |||||||||||||||||||||||||| |||||||| |||  ||| | |||||||||||||||||||||| |||||| ||||| ||||| || ||||||||    
T  2594852 taattatcagtataaacatgcttacaaggttgtataattcttctctgctaaatatttgtttccataatttcatgaataataacaattggatcagaaaaat 2594753  T
Q  214 ctag---atattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttg 310  Q
    ||||   ||||||||||||||||| ||||||||||||| |       || ||||||||||||| ||||||  |||||||||||  |||||||||||||||    
T  2594752 ctagttgatattgcacaaccttttcagtttcatttttcgtagaaaa-tattttttgacttgtgatttaatttagcgatgattaatataactacctatttg 2594654  T
Q  311 ttaattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||   || |||| ||||| ||  |||||| || ||| ||||||||||    
T  2594653 ttaattctttcattgtttagcaataggaattttagggttctaattatgagaattgaacccttgtttacttggccaactttttgttgttattagatca 2594557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 115 - 407
Target Start/End: Complemental strand, 10304972 - 10304677
Alignment:
Q  115 taattatcagtataaacatgcttacagg-ttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaat 213  Q
    |||||||||||||||||||||||||||| |||||| |||  ||| |  ||||||||||||| |||||||| ||||| |||||   ||| || ||||||||    
T  10304972 taattatcagtataaacatgcttacagggttgtataattcttctctgataaatatttgtttgcataattgaatgaataataacttttggatcagaaaaat 10304873  T
Q  214 ctag---atattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttg 310  Q
    ||||   ||||||||||||||||||||||||||||||| |       || ||||||||||||| ||||||   ||||||||||  |||||||||||||||    
T  10304872 ctagttgatattgcacaacctttttagtttcatttttcatagaaaa-tattttttgacttgtgatttaatttcgcgatgattaatataactacctatttg 10304774  T
Q  311 ttaattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||  |||||||||  |||||||||||||    
T  10304773 ttaattctttcattgtttagcaataggaattttagggttctaattatgagaagacaaaccttatttacttggacaacttgttggtgctattagatca 10304677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 115 - 407
Target Start/End: Complemental strand, 2573210 - 2572915
Alignment:
Q  115 taattatcagtataaacatgcttacagg-ttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaat 213  Q
    |||||||||||||||||||||||||||| |||||| |||  | | | ||||||||||||||||||||||||||||| ||||| ||||| || ||||||||    
T  2573210 taattatcagtataaacatgcttacagggttgtataattcttgtctgctaaatatttgtttccataattgcatgaataataacaattggatcagaaaaat 2573111  T
Q  214 ctag---atattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttg 310  Q
    ||||   ||||||||||||||||| | ||||||||||| |       || ||||| ||||||||||||||   ||||||||||  |||||||||||||||    
T  2573110 ctagttgatattgcacaaccttttcattttcatttttcatagaaaa-tatttttttacttgtgttttaattttgcgatgattaatataactacctatttg 2573012  T
Q  311 ttaattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||| |||||| ||||||| ||  ||||  |||||||||  |||||||||||||    
T  2573011 ttaattctttcattgtttagcaatagaaattttagggttccaattatcagaagacaaaccttgttcccctggccaacttgttgctgctattagatca 2572915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 116 - 407
Target Start/End: Original strand, 2592956 - 2593250
Alignment:
Q  116 aattatcagtataaacatgcttacagg-ttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatc 214  Q
    |||||||| |||||||||||||||||| |||||| ||||||||   ||||||||||||||| ||||||||||||| ||||| ||||| || |||||||||    
T  2592956 aattatcaatataaacatgcttacagggttgtatcattaatctcagctaaatatttgtttcaataattgcatgaataataacaattggatcagaaaaatc 2593055  T
Q  215 ta---gatattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttgt 311  Q
    ||   |||||||||||||||||| ||||| |||||||||       || |||||| ||||||||||||| || | || ||||  ||||||||||||||      
T  2593056 tagttgatattgcacaaccttttcagtttaatttttctt-agaaaatattttttgtcttgtgttttaattcaccaataattaatataactacctattttc 2593154  T
Q  312 taattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||||| || |||| ||||| ||  ||||||||| | ||||||| ||||    
T  2593155 taattctttcattgtttagcaataggaagtatagggttctaattatgagaagacaacccttatttacttggccaacttgttgtcgctattatatca 2593250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 378
Target Start/End: Original strand, 2602146 - 2602410
Alignment:
Q  116 aattatcagtataaacatgcttacagg-ttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatc 214  Q
    ||||| ||||||||||||||||||||| |||||| |||||||| | |||||||||||||||||| ||| |||||| || || ||||| || | |||||||    
T  2602146 aattaacagtataaacatgcttacagggttgtatcattaatctctgctaaatatttgtttccatcattacatgaataacaacaattggatcaaaaaaatc 2602245  T
Q  215 ta---gatattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttgt 311  Q
    ||   | ||| ||| |||||||| ||||||||||||| |       |  ||||| |||||||||||||| ||| ||||| ||  |||||||| | |||||    
T  2602246 tatttgctatcgcaaaaccttttcagtttcatttttcgtagaaatgt--ttttttacttgtgttttaattcagtgatgaataatataactacatgtttgt 2602343  T
Q  312 taattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttac 378  Q
    |||||||||||||||| |||||||| ||||||||||| || ||||| |||||| ||||||| |||||    
T  2602344 taattctttcattgttcagcaatagaaattttagggtactgattataagaagacaaaccttgtttac 2602410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 169 - 407
Target Start/End: Original strand, 10303130 - 10303371
Alignment:
Q  169 ttgtttccataattgcatgaacaataaaaattgaattagaaaaatctag---atattgcacaaccttttt-agtttcatttttcttnnnnnnntaatttt 264  Q
    ||||||| ||||||||||||| || || ||||| || ||||||||||||   |||||||||||||  ||| ||||| |||||||||       || ||||    
T  10303130 ttgtttcaataattgcatgaataagaacaattggatcagaaaaatctagttgatattgcacaacccatttcagtttaatttttcttagaaaa-tattttt 10303228  T
Q  265 tgacttgtgttttaatacagcgatgattagcataactacctatttgttaattctttcattgtttagcaataggaattttagggttctcattatgagaaga 364  Q
    || ||||||||||||| || | || ||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  10303229 tgtcttgtgttttaattcaccaataattaatataactacctattttctaattctttcattgtttagcaataggaattttagggttctaattttgagaaga 10303328  T
Q  365 taaaccttctttacctgatcaacttgttattgctattagatca 407  Q
     || | || ||||| ||  |||||||||  |||||||| ||||    
T  10303329 caacctttatttacttggccaacttgttgctgctattatatca 10303371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 2615815 - 2615926
Alignment:
Q  261 tttttgacttgtgttttaatacagcgatgattagcataactacctatttgttaattctttcattgtttagcaataggaattttagggttctcattatgag 360  Q
    ||||| ||||||||||||||  || ||||||||  |||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||  ||||| ||    
T  2615815 ttttttacttgtgttttaattaagtgatgattaatataactacatgtttgttaattctttcattgttcagcaataggaattttagagttcagattataag 2615914  T
Q  361 aagataaacctt 372  Q
    |||| |||||||    
T  2615915 aagacaaacctt 2615926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 2615687 - 2615755
Alignment:
Q  116 aattatcagtataaacatgcttaca-ggttgtattattaatcttttctaaatatttgtttccataattg 183  Q
    ||||| ||||||||| ||||||||| |||||||| ||||||||   |||||||||||||||||||||||    
T  2615687 aattaacagtataaagatgcttacaaggttgtatcattaatctcaactaaatatttgtttccataattg 2615755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2594959 - 2594918
Alignment:
Q  9 aatgaagatgta-tagtggaggaggctgaacaaggtgtagtt 49  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  2594959 aatgaagatgtagtagtggaggaggctgaacaaggtgtagtt 2594918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 116 - 407
Target Start/End: Complemental strand, 22193780 - 22193485
Alignment:
Q  116 aattatcagtataaacatgcttacag-gttgtattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatc 214  Q
    ||||||| |||||||| ||| ||||  |||||||  ||||||| | |||||||||||||||| ||| | |||||| || || ||||| || |||||||||    
T  22193780 aattatctgtataaacctgcctacaatgttgtatcgttaatctctgctaaatatttgtttccctaagtccatgaataacaacaattggatcagaaaaatc 22193681  T
Q  215 ta---gatattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactaccta-tttg 310  Q
    ||   |||||||||||||||||| |||||||||||||||        | |||||||||||||||||| | |||| |||||||  ||||||||| | |||     
T  22193680 taattgatattgcacaaccttttcagtttcatttttcttagaaaac-attttttgacttgtgttttatttcagcaatgattaatataactaccaacttta 22193582  T
Q  311 ttaattctttcattgtttagcaataggaattttagggttctcattatgagaagataaaccttctttacctgatcaacttgttattgctattagatca 407  Q
    |||||||||| ||||||||||||||| |||||||||||| | |||||||||||| ||||||| ||||| ||  | ||||||| ||||||||||||||    
T  22193581 ttaattcttttattgtttagcaatagtaattttagggttatgattatgagaagacaaaccttgtttacttggccgacttgtttttgctattagatca 22193485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 364
Target Start/End: Original strand, 22229572 - 22229819
Alignment:
Q  120 atcagtataaacatgcttacaggttg-tattattaatcttttctaaatatttgtttccataattgcatgaacaataaaaattgaattagaaaaatctag- 217  Q
    |||||||||||||||| |||||| || ||| ||||||||   ||||||||||||||| ||||||| ||||| ||||| ||||| || ||||||||||||     
T  22229572 atcagtataaacatgcctacagggtggtatcattaatctcagctaaatatttgtttcaataattgtatgaataataacaattggatcagaaaaatctagt 22229671  T
Q  218 --atattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttgttaat 315  Q
      ||||||||||||||||| |  ||||||||||||       ||  ||||| ||||||||||||| || |||| ||||   |||||||||||||  ||||    
T  22229672 tgatattgcacaaccttttcatattcatttttcttagaaaa-tatattttgtcttgtgttttaattcaccgataattaatttaactacctattttctaat 22229770  T
Q  316 tctttcattgtttagcaataggaattttagggttctcattatgagaaga 364  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  22229771 tctttcattgtttagcaatgggaattttagggttctaattattagaaga 22229819  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 372
Target Start/End: Complemental strand, 22238685 - 22238531
Alignment:
Q  217 gatattgcacaacctttttagtttcatttttcttnnnnnnntaatttttgacttgtgttttaatacagcgatgattagcataactacctatttgttaatt 316  Q
    |||||||||||||||||| ||||||||||||| |       || ||||| ||||||| ||||||  | |||||||||  |||||||||||||||||||||    
T  22238685 gatattgcacaaccttttcagtttcatttttcatagaaaa-tatttttttacttgtgatttaatttatcgatgattaatataactacctatttgttaatt 22238587  T
Q  317 ctttcattgtttagcaataggaattttagggttctcattatgagaagataaacctt 372  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  22238586 ccttcattgtttagcaataggaattttagggttctaattatgagaagacaaacctt 22238531  T

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