View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_13 (Length: 393)
Name: NF9612A_high_13
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_13 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 38725272 - 38725649
Alignment:
| Q |
13 |
attctgataagagttaaaaacaattgcgtctggccaccacgtccacgtcgcgttagcttctttggtctttgttaagttcatgttaatgttcattaaaagg |
112 |
Q |
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| T |
38725272 |
attctgataagagttaaaaacaattgcgtctggccaccacgtccacgtcgcgttagcttctttggtctttgttaagttcatgttaatgttcattaaaagg |
38725371 |
T |
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| Q |
113 |
ggtgcatatgaagccatgatgacgaggtcgctattcctctcaattccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcat |
212 |
Q |
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| T |
38725372 |
ggtgcatatgaagccatgatgacgaggtcgctattcctctcaattccaataaggaatgcagcttcagccacagctgcataaagacttccatgaccagcat |
38725471 |
T |
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| Q |
213 |
cgtcacgccaaacagcatactcactaaca---aatgcctttggaccggatctcggggccttatcaaacctggtattcctagaaaacatgtccggagaact |
309 |
Q |
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| T |
38725472 |
cgtcacgccaaacagcatactcactaacaaataatgcctttggaccggatctcggggccttatcaaacctggtattcctagaaaacatgtccggagaact |
38725571 |
T |
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| Q |
310 |
tgtatagacatggtattcgtagatatctgccgggtgttttagtggatgttcagaactgtcgcagtttgagataatttg |
387 |
Q |
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| T |
38725572 |
tgtatagacatggtattcgtagatatctgctgggtgttttagtggatgttcagaaccgttgcagtttgagataatttg |
38725649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 31633 - 31543
Alignment:
| Q |
158 |
ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct |
248 |
Q |
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| T |
31633 |
ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct |
31543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 32003 - 31971
Alignment:
| Q |
13 |
attctgataagagttaaaaacaattgcgtctgg |
45 |
Q |
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| T |
32003 |
attctgataagagttaaaaacaattgcatctgg |
31971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 34164812 - 34164722
Alignment:
| Q |
158 |
ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct |
248 |
Q |
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| T |
34164812 |
ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct |
34164722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 34171309 - 34171219
Alignment:
| Q |
158 |
ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct |
248 |
Q |
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| T |
34171309 |
ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct |
34171219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 34214907 - 34214817
Alignment:
| Q |
158 |
ccaataaggaatgcagcttcggccacagctgcataaagacttccatgaccagcatcgtcacgccaaacagcatactcactaacaaatgcct |
248 |
Q |
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| T |
34214907 |
ccaatgagaaatgcagcttcagcaacagctgcataaaggcttccagcaccagcatcttccttccaaacagcatactcactaacaaatgcct |
34214817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34165182 - 34165150
Alignment:
| Q |
13 |
attctgataagagttaaaaacaattgcgtctgg |
45 |
Q |
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| T |
34165182 |
attctgataagagttaaaaacaattgcatctgg |
34165150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34171679 - 34171647
Alignment:
| Q |
13 |
attctgataagagttaaaaacaattgcgtctgg |
45 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
34171679 |
attctgataagagttaaaaacaattgcatctgg |
34171647 |
T |
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