View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_high_17 (Length: 360)

Name: NF9612A_high_17
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_high_17
NF9612A_high_17
[»] chr5 (1 HSPs)
chr5 (23-318)||(3273845-3274138)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 318
Target Start/End: Original strand, 3273845 - 3274138
Alignment:
Q  23 cagcccagcaaatttttcaaagggatgatggtaagggaatacaatagataaacctacattattatatattggtttggattttttagaaaatgcatagaaa 122  Q
    |||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3273845 cagcacagcaaatttttcaaagggatg---gtaagggaatacaatagataaacctacattattatatattggtttggattttttagaaaatgcatagaaa 3273941  T
Q  123 gagataatgaagaagaaatttggagaattcaaaacattacatgcagatgcagatgtgtagatggtattttttatacgcaagc-aaatcatggcatttcaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  3273942 gagataatgaagaagaaatttggagaattcaaaacattacatgcagatgcaaatgtgtagatggtattttttatacgcaagcaaaatcatggcatttcaa 3274041  T
Q  222 tattctatatacaagaggaaaaatataccttttgaatgaaaaatggtccaacccaattgataacaacaaaacccaaaatgccaaggcatatgataga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3274042 tattctatatacaagaggaaaaatataccttttgaatgaaaaatggtccaacccaattgataacaacaaaacccaaaatgctaaggcatatgataga 3274138  T

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