View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_29 (Length: 302)
Name: NF9612A_high_29
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_29 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 38313209 - 38313498
Alignment:
| Q |
13 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
112 |
Q |
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| T |
38313209 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
38313308 |
T |
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| Q |
113 |
agtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattattatattgaaaaaccatgtttatc |
212 |
Q |
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| T |
38313309 |
agtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattatta-attgaaaaaccatgtttatc |
38313407 |
T |
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| Q |
213 |
acaagccaacttaatcaattctcttctcc-ttcactttccacctaaaaatatacgcatgggactggctagaaagcaaacaaagcagtagca |
302 |
Q |
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| T |
38313408 |
acaagccaacttaatcaattctcttctcctttcactttccacctaaaaatatacacatggggctggatagaaagcaaacaaagcagtagca |
38313498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 38280334 - 38280456
Alignment:
| Q |
31 |
acaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagtcaatatgacagc |
130 |
Q |
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| T |
38280334 |
acaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagttgatataacaga |
38280433 |
T |
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| Q |
131 |
ttctagaattactttccctgcat |
153 |
Q |
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| T |
38280434 |
tactagaatgactttccctgcat |
38280456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 38303249 - 38303395
Alignment:
| Q |
8 |
gatatgaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacaca |
107 |
Q |
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| T |
38303249 |
gatatgaactaacaaagctccaatcaagaatggagctaaaaagctgaaatcataacatctttttgcagcccaagacgtgtagagagtcaaactcaacaca |
38303348 |
T |
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| Q |
108 |
accacagtagtcaatatgacagcttctagaattactttccctgcatt |
154 |
Q |
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| T |
38303349 |
accacattagttaatatgacagcttctaaaattacttttcctacatt |
38303395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 38275393 - 38275533
Alignment:
| Q |
13 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
112 |
Q |
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| T |
38275393 |
gaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaagctgaacgcaactgc |
38275492 |
T |
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| Q |
113 |
agtagtcaatatgacagcttctagaattactttccctgcat |
153 |
Q |
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| T |
38275493 |
agtagttgatataacagatactagaatggctttccctgcat |
38275533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 38271642 - 38271782
Alignment:
| Q |
13 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
112 |
Q |
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| T |
38271642 |
gaaccaacaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaagctgaacacaactgc |
38271741 |
T |
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| Q |
113 |
agtagtcaatatgacagcttctagaattactttccctgcat |
153 |
Q |
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| |||| |||| |||| | |||||||| |||||||||||| |
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| T |
38271742 |
aatagttgatataacagatactagaattgctttccctgcat |
38271782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 38272164 - 38272202
Alignment:
| Q |
206 |
gtttatcacaagccaacttaatcaattctcttctccttc |
244 |
Q |
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| T |
38272164 |
gtttatgaaaagccaacttaatcaattctcttctccttc |
38272202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 31701108 - 31700990
Alignment:
| Q |
28 |
caaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtca-agctgaacacaaccacagtagtcaatatga |
126 |
Q |
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|||||||||| ||||| | ||| | ||||||| ||||| |||| |||||||||||||||||||||| |||| | ||| ||||||| ||||||||| | |
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| T |
31701108 |
caaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtgtagagagtcagagct-atcaccaccacagcagtcaatataa |
31701010 |
T |
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| Q |
127 |
cagcttctagaattactttc |
146 |
Q |
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| T |
31701009 |
cagcttccagaattactttc |
31700990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 16238514 - 16238565
Alignment:
| Q |
85 |
tgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctaga |
137 |
Q |
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| T |
16238514 |
tgtagagaatcaagctgaacacaacca-aatagtcaatataatagcttctaga |
16238565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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