View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_4 (Length: 524)
Name: NF9612A_high_4
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 15 - 501
Target Start/End: Original strand, 6475020 - 6475515
Alignment:
| Q |
15 |
atggacatcagaacttatattttgactatgtcaatttgtgatttgaaatttataaacttaaaatttaagtggtttgatcttaatctaatttcctagatat |
114 |
Q |
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| T |
6475020 |
atggaaatcagaacttatattttaactatgtcaatttgtgatttgaaatttataaacttaaaatttaagtggtttgatcttaatccaatttcttagatat |
6475119 |
T |
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| Q |
115 |
agaccgtagnnnnnnnnnnnnnnnnnggacaaaatataggcagtagttgttaagttgattcttatagacagtagttgattcatgtataaaaatattttac |
214 |
Q |
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| T |
6475120 |
agacggtagtttttttttttttttttg-acaaaatatagacagtagttgttaagttgattcttatagacagtagttgattcatgtataaaaatattttac |
6475218 |
T |
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| Q |
215 |
ttt----------tatttgcctagtaacttctgcttgaggttaaacttacattaaatctacatcaaactt-gtttttagagtgnnnnnnnnnntctaatt |
303 |
Q |
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| T |
6475219 |
tttaaatcatatttatttgcctagtaacttctgcttgaggttaaacttacattaaatctacatcaaactttgtttttagagtgaaaaaaaaa-tctaatt |
6475317 |
T |
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| Q |
304 |
aatttttaacaaaatcaagttcaaaaacacacttcgttgaaacgttagacatcatttctcaaatggagagggttacacataattgttgagcgaaaaattt |
403 |
Q |
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| T |
6475318 |
aatttttaacaaaatcaagttcaaaaacacactctgttgaaacgttagacatcatttctcaaatggagagggttacacataattgttgagcgaaaaattt |
6475417 |
T |
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| Q |
404 |
atttagtaaatgcatcacaaagagaaattatgtatttttgtgtaaagggcaaaaataagctgctgttaacaagatatgtatatgtacgtattgaatat |
501 |
Q |
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| T |
6475418 |
atttagtaaatgcatcacaaagagaaattatgcgtttttgtgtaaagggcaaaaataagctgctgttaacaagatatgtacatgtacgtattgaatat |
6475515 |
T |
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