View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_47 (Length: 244)
Name: NF9612A_high_47
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1775885 - 1776101
Alignment:
| Q |
1 |
ccgtctgcgcctgttgatcttactgaccatcatctctcttgcagcgtggctctatcaaccagatatcgcacctcctttcactgctgtcgtcgttaaactc |
100 |
Q |
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| T |
1775885 |
ccgtctgcgcctgttgatcttactgaccatcatctctcttgcagcgtggctctatcaaccatatatcgcagctcctttcactgctgtcgtcgttaaactc |
1775984 |
T |
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| Q |
101 |
accgtcgccgagaagtgaacgcaaatcagacgaagacatatgaataggagaaatagatcgaaagatggcggtaggtggagatggaaacatagaccgaaaa |
200 |
Q |
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| T |
1775985 |
accgtcgccgagaagtgaacgcaaatcagacgaagacatatgaataggagaaatagaacgaaaaatggcgggaggtggagatggaaacattgaccggaaa |
1776084 |
T |
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| Q |
201 |
gatgagaggttagcggc |
217 |
Q |
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|||| |||||||||||| |
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| T |
1776085 |
gatgggaggttagcggc |
1776101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 28522178 - 28522010
Alignment:
| Q |
22 |
actgaccatcatctctcttgcagcgtggctctatcaaccagatatcgcacctcctttcactgctgtcgtcgttaaactcaccgtcgccgagaagtgaacg |
121 |
Q |
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| T |
28522178 |
actgaccatcatctctcttgcactgtggctctatcaaccaggtctcgcagctcctttcatttttgtcgtcgttaaactcattgttgtcgataagtaaatg |
28522079 |
T |
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| Q |
122 |
caaatcagacgaagacatatgaataggagaaatagatcgaaagatggcggtaggtggagatggaaacat |
190 |
Q |
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| T |
28522078 |
aaaatcatacgaagacgcgtgaataggagaactagaaccaaagatcgcgggaggtggtgatggatacat |
28522010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 7938896 - 7938773
Alignment:
| Q |
45 |
cgtggctctatcaaccagatatcgcacctcctttcactgct---gtcgtcgttaaactcaccgtcgccgagaagtgaacgcaaatcagacgaagacatat |
141 |
Q |
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||||| ||| |||||||||| ||||| |||||||| || | ||||||||||||||| || || |||||||||||||||||||||| |||||||||| |
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| T |
7938896 |
cgtggttctctcaaccagatctcgcaactcctttctcttccaccgtcgtcgttaaactcgccatcttcgagaagtgaacgcaaatcagatgaagacatat |
7938797 |
T |
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| Q |
142 |
gaataggagaaatagatcgaaaga |
165 |
Q |
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| T |
7938796 |
gaatatgagaactagaacgaaaga |
7938773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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