View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_5 (Length: 498)
Name: NF9612A_high_5
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Complemental strand, 46582285 - 46581808
Alignment:
| Q |
7 |
ggttgtgtcactgtaaatggaggaggctgttgttgatacactggcattgacgacgatgaagatgatgac-atta-attgtgtttccttttacagaaacta |
104 |
Q |
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| T |
46582285 |
ggttgtgtcactgtaaacggaggaggctgttgttgatacactggcattgacgacgatgaagatgaagatgatgacattgtgtttccttttacagaaacta |
46582186 |
T |
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| Q |
105 |
gaacaagttcttagtagttggttgtttggattggtaggttagattgaatgtaaggaagtagttggagaataagcgatgcggagttaaacagaattactac |
204 |
Q |
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| T |
46582185 |
gaacaagttcttagtagttggttgtttggattggtaggttagattgaatgtaaggaagtagttggataataagcaatgcggagttaaacagaattactac |
46582086 |
T |
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| Q |
205 |
tggcaccactttaattacttgtaatgaagattgtaggagagtgtagaagaatgcatgttattattatttggatgcttggtgagatgttgttatgagacat |
304 |
Q |
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| T |
46582085 |
tggcaccactttaattacttgtaatgaagattgtaggagagtgtaaaagaatgcatgttattattatttggatgcttgatgagatgttgttatgagacat |
46581986 |
T |
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| Q |
305 |
tctcattctgaaattctctttgtaaaggacgacttatattatatagcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggttta |
404 |
Q |
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| T |
46581985 |
tctcattctgaaattctcgttgtaaaggatgacttatattatatagcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggttta |
46581886 |
T |
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| Q |
405 |
agaattttgtattctttgatannnnnnnnnnaatttctcacatatttacttcaccagaatagaatcactgtcatactat |
483 |
Q |
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| T |
46581885 |
agaattttgtattctttgat-ttttttttttaatttctcacatatttacttcactagaatagaatcactgtcatactat |
46581808 |
T |
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