View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_50 (Length: 230)
Name: NF9612A_high_50
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5895096 - 5894872
Alignment:
| Q |
1 |
tatgaggagtgctggattcaagataggagaaaatacctatctttcctttcatgaaagctttattttgaagaaaatgcttaaggatgctgttaagctttat |
100 |
Q |
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| T |
5895096 |
tatgaggagtgctggattcaagataggagaaaatacctatctttcctttcatgaaagctttattttgaagaaaatgcttaaggatgctgtgaagctttat |
5894997 |
T |
|
| Q |
101 |
gagtttgttatgactggtcctaacaa-agcctaggttgtagacaattattgagtagtattgtttcttttgacgagctcgatatggatttgttttcaaggg |
199 |
Q |
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|||||||||||| ||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894996 |
gagtttgttatggctggtcctaacaagaacctaggttgtagaaatctattgagtagtattgtttcttttgacgagctcgatatggatttgttttcaaggg |
5894897 |
T |
|
| Q |
200 |
ctgtgaaggtttttaccgaaaatgg |
224 |
Q |
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| T |
5894896 |
ctgtgaaggtttttaccaaaaatgg |
5894872 |
T |
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