View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_high_51 (Length: 230)
Name: NF9612A_high_51
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32723441 - 32723681
Alignment:
| Q |
1 |
agaaaaataccaatcgttaaagcacaagacccattactcattagtcaaagttagcctgagaatccgcgacgaatctaggatgagtaagattagtgg---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723441 |
agaaaaataccaatcgttaaagcacaagacccattactcattagtcaaagttagcctgagaatccgcgacgaatctaggatgagtaagattagtggatta |
32723540 |
T |
|
| Q |
97 |
attgttgattgaggaagaaagaaatcagtttgttggattgatta--------------tgtttcatgtggaattatcatgagttgtccacttgggctaga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32723541 |
attgttgattgaggaagaaagaaatcagtttgttggattgattatgttttacagagattgtttcatgtggaattatcatgagttgtccacttgggctaga |
32723640 |
T |
|
| Q |
183 |
taaattagtcaaccacatgctcccatttatagaagaatgtaa |
224 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32723641 |
t-aattagtcaaccagatgctcccatttatagaagaatgtaa |
32723681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University