View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_52 (Length: 222)
Name: NF9612A_high_52
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_52 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1674786 - 1674565
Alignment:
| Q |
1 |
gtcagtgctacatatagatcttgattatcaaaacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatcataaaagagagaaaagcat |
100 |
Q |
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| T |
1674786 |
gtcagtgctacatatagatcttgattatcaaaacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatcataaaagagagaaaagcat |
1674687 |
T |
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| Q |
101 |
ttgtacatacacgaatgaaatcttcaaggaaccaagaaggcacagccctagcaggcctaacaaaagacaacctcatcaattccctaagcctatcaggagt |
200 |
Q |
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| T |
1674686 |
ttgtacatacacgaatgaaatcttcaaggaaccaagaaggcacagccctagcaggcctaacaaaagacaacctcatcaattccctaagcctatcaggagt |
1674587 |
T |
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| Q |
201 |
ttgtggcaacaaaatactacaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1674586 |
ttgtggcaacaaaatactacaa |
1674565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 1674807 - 1674757
Alignment:
| Q |
32 |
aacatgtcttcaatcaaaagtgtcagtgctacatatagatctcgattatca |
82 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1674807 |
aacacgtctccaatcagaagtgtcagtgctacatatagatcttgattatca |
1674757 |
T |
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