View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_high_6 (Length: 473)
Name: NF9612A_high_6
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Complemental strand, 33443833 - 33443389
Alignment:
| Q |
9 |
aattctatggactgcttcggtaaaaccactgaaacttttaacatgaaaagaatcagattctccatgatccactgacttttgagttatctcagatttgcaa |
108 |
Q |
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| T |
33443833 |
aattctatggactgcttcggtaaaaccactgaaacttttaacatgaaaagaatcagattctccatgatccactgacttttgagttatctcagatttgcaa |
33443734 |
T |
|
| Q |
109 |
ggagcatttgagcgatttatacacccgaatgcgatttttatgtcatcaaatagttcatcgagacttcgtttcgatatgcgtttttccttcaacatggcat |
208 |
Q |
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| T |
33443733 |
ggagcatttgagcgatttatacacccgaatgcgatttttatgtcatcaaatagttcatcgagacttcgtttcgatatgcgtttttccttcaacatggcat |
33443634 |
T |
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| Q |
209 |
tcaaaacaatctgaagccaatcaaattggttttgatttgttgtatgtttgaattggatctccttatttgtctcaccgaggtcaaaatcttgttcaactgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443633 |
tcaaaacaatctgaagccaatcaaattggttttgatttgttgtatgtttgaattggatctccttatttgtctcaccgaggtcaaaatcttgttcaactgg |
33443534 |
T |
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| Q |
309 |
cactagctccctcccacttacatcggacaggtatccttctttcggtgtattaacagaaactatagcccttttctccatctcaacaaaatcatccatggag |
408 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443533 |
cactagctccctcccacttacatcggacaagtatccttctttcggtgtattaacagaaactatagcccttttctccatctcaacaaaatcatccatggag |
33443434 |
T |
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| Q |
409 |
tacatgtcctgagcttctatggctttattgttctcctgaatttta |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443433 |
tacatgtcctgagcttctatggctttattgttctcctgaatttta |
33443389 |
T |
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