View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_high_7 (Length: 456)
Name: NF9612A_high_7
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 144 - 436
Target Start/End: Original strand, 42747165 - 42747443
Alignment:
| Q |
144 |
tttgacatggctcacttgcacaatctgaacgatttctgtagctgttctattcctcctggtgtattggctgtgtcatctatttctttccaagaccctttaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747165 |
tttgacatggctcacttgcacaatctgaacgatttctgtagctgttctattcctcctggtgtattggctgtgtcatctatttctttccaagaccctttaa |
42747264 |
T |
|
| Q |
244 |
tcactttgtaacaattcttactctcactctaaaaatcatataatcacatgcaataaagaaagaaaagcaacttattaactaagagatcggcagtgtactt |
343 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747265 |
tcactttgtaacaattctcactctcactctaaaaatcatataatcatatgcaacaaagaaagaaaagcaacttattaactaagagatcggcagtgtactt |
42747364 |
T |
|
| Q |
344 |
tgaatgcgtaacactgaagatatctagaattgaacagaaaattgtaaatgaaaacttcaggttaatgaccacaacaggagattaggtcatttt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747365 |
tgaatgcgtaacactgaagatatctagaatttgacag--------------aaacttcaggttaatgaccacaacaggagattaggtcatttt |
42747443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 42747047 - 42747100
Alignment:
| Q |
26 |
gtttgaagccaatttttcagatcacctgcacttatattattgctgtttcaacag |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747047 |
gtttgaagccaatttttcagatcacctgcacttatattattgctgtttcaacag |
42747100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 42742533 - 42742578
Alignment:
| Q |
228 |
ttccaagaccctttaatcactttgtaacaattcttactctcactct |
273 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
42742533 |
ttccatgacccttttatcactttgtaacaattttcactctcactct |
42742578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University