View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_102 (Length: 276)
Name: NF9612A_low_102
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_102 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 170334 - 170083
Alignment:
| Q |
14 |
gaagttgggtatatgtcagaggttcgtcagtccatgcccttgtgtttgcccaaacatgtgttaggcgcaattattgccaggagtgactagggatataagg |
113 |
Q |
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| T |
170334 |
gaagttgggtatatgtcagaggttcgtcagtccatgcccttgtgtttgcccaaacatgtgttaggcccaattattgctaggagtgactagggatataggg |
170235 |
T |
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| Q |
114 |
ggatagtccctcgttgcattgttcagaggaattcttgtaatttggacggtaacactgtaagctttaattcaatgaagaaatacacagaattatagcagct |
213 |
Q |
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| T |
170234 |
ggatagtccctcgttgcattgttcagaggaattcttgtaatttggacggtaacactgtaaactttaattcaatgaagaaatacacagaattatagcagct |
170135 |
T |
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| Q |
214 |
atataatcgcaaatttagacaagattaaaaattaaatgaacaaagatcgtat |
265 |
Q |
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|||||||| |||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
170134 |
atataatcccaaatttaaacaacattaaaaattaaatgaataaagatcgtat |
170083 |
T |
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