View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_103 (Length: 275)

Name: NF9612A_low_103
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_103
NF9612A_low_103
[»] chr1 (16 HSPs)
chr1 (26-275)||(13244668-13244917)
chr1 (118-256)||(13271474-13271612)
chr1 (34-254)||(13085911-13086131)
chr1 (109-261)||(30368269-30368421)
chr1 (117-270)||(12964027-12964180)
chr1 (41-261)||(13100812-13101031)
chr1 (109-261)||(13070337-13070489)
chr1 (109-256)||(13094278-13094425)
chr1 (39-261)||(13007009-13007231)
chr1 (34-248)||(13081039-13081253)
chr1 (39-261)||(13204268-13204490)
chr1 (109-256)||(13129707-13129854)
chr1 (109-256)||(13161400-13161547)
chr1 (117-256)||(19279334-19279473)
chr1 (35-256)||(13065379-13065600)
chr1 (118-177)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (149-240)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 275
Target Start/End: Complemental strand, 13244917 - 13244668
Alignment:
Q  26 caactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttc 125  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  13244917 caactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttc 13244818  T
Q  126 caccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  13244817 caccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattg 13244718  T
Q  226 aaagctatgaacttgtaagacgggacatgtacaatgcctcctctaactga 275  Q
    ||||||||||||||||||||||| |||| || ||| ||||||||| ||||    
T  13244717 aaagctatgaacttgtaagacggtacatttataatccctcctctagctga 13244668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 13271474 - 13271612
Alignment:
Q  118 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggac 217  Q
    |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  218 ctgcattgaaagctatgaacttgtaagacgggacatgta 256  Q
    |||||||||| ||||||||||||||||| || |||||||    
T  13271574 ctgcattgaatgctatgaacttgtaagatggtacatgta 13271612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 13085911 - 13086131
Alignment:
Q  34 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 133  Q
    ||||||||||| ||||||||||| | || ||| || || || |||| |||||| ||  ||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  134 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 233  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  234 gaacttgtaagacgggacatg 254  Q
    ||||||| |||| || |||||    
T  13086111 gaacttgcaagatggtacatg 13086131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 30368421 - 30368269
Alignment:
Q  109 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 208  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||||||||| || |||| |||||| || |||||||    
T  30368421 gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac 30368322  T
Q  209 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatg 261  Q
    ||||||| |||| |||||||||||||||||||||||| || ||||||| ||||    
T  30368321 ttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatg 30368269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 12964180 - 12964027
Alignment:
Q  117 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 216  Q
    ||||||||||||||| | |||| |||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  217 cctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctcta 270  Q
    ||||||||||| ||||||||||| ||||| || || |||| |||  ||||||||    
T  12964080 cctgcattgaatgctatgaacttataagatggcacttgtataatttctcctcta 12964027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 261
Target Start/End: Original strand, 13100812 - 13101031
Alignment:
Q  41 aaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatgcg 140  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||| ||||  ||| ||||    || | |||| ||||||||||||||||||||||||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  141 aaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 240  Q
    |||||||  |||||||| |||||| ||||| ||||||||||  ||||||||||| || || |||||||||||||| |||| |||||||||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  241 taagacgggacatgtacaatg 261  Q
    ||||| || ||||||| ||||    
T  13101011 taagatggtacatgtataatg 13101031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 13070489 - 13070337
Alignment:
Q  109 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 208  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  209 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatg 261  Q
    |||| ||||||| |||||||||||||||||||||||| || ||||||| ||||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaagatggaacatgtataatg 13070337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 13094278 - 13094425
Alignment:
Q  109 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 208  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || ||||||||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  209 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgta 256  Q
    |||| || ||||  ||||||||||||||||||||||| || |||||||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaagatggtacatgta 13094425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 13007009 - 13007231
Alignment:
Q  39 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 138  Q
    |||||||||||||||| ||| ||  ||||| ||||| ||||||||| ||||  ||| ||||    || | |||| |||||||||| ||||||||| ||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  139 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 238  Q
     |||||||   ||||||||  ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||||||||| |||||||||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  239 tgtaagacgggacatgtacaatg 261  Q
    ||||||| || ||||||| ||||    
T  13007209 tgtaagatggtacatgtataatg 13007231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 13081253 - 13081039
Alignment:
Q  34 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 133  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||  |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  134 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 233  Q
    | ||| |||||||  |||| |  | ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  234 gaacttgtaagacgg 248  Q
    |||||| ||||||||    
T  13081053 gaacttataagacgg 13081039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 13204268 - 13204490
Alignment:
Q  39 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 138  Q
    |||||||||||||||| ||| ||  |||||||| || | ||||||| ||||  ||| |||| |  |  | |||||||||||||||||||| | || ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  139 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 238  Q
     |||| |||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | ||||||||||||||||| |||||||||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  239 tgtaagacgggacatgtacaatg 261  Q
    ||||||| || ||||||| ||||    
T  13204468 tgtaagatggtacatgtataatg 13204490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 13129707 - 13129854
Alignment:
Q  109 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 208  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  209 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgta 256  Q
    |||| || ||||  |||||||||| |||||||||||| || |||||||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaagatggtacatgta 13129854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 256
Target Start/End: Original strand, 13161400 - 13161547
Alignment:
Q  109 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 208  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  209 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgta 256  Q
    |||| || ||||  ||||||| ||||||||||||||| || |||||||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaagaaggtacatgta 13161547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 256
Target Start/End: Complemental strand, 19279473 - 19279334
Alignment:
Q  117 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 216  Q
    |||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||  ||  |||||||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  217 cctgcattgaaagctatgaacttgtaagacgggacatgta 256  Q
    |||||||| || |||||||||||||| || || |||||||    
T  19279373 cctgcattaaacgctatgaacttgtacgatggtacatgta 19279334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 13065600 - 13065379
Alignment:
Q  35 tatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctg 134  Q
    |||||||||||||||||||| ||| |  |||||| ||||| |||||||| |  |||| |||||||   ||  | |||||||| ||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  135 tatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatg 234  Q
    ||||| |||||||||||  | ||  || ||| |||| ||||||| ||| ||| | |||||||| || | ||||||||| || ||||||||||||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  235 aacttgtaagacgggacatgta 256  Q
    |||||||||||||| |||||||    
T  13065400 aacttgtaagacggtacatgta 13065379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  118 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatt 177  Q
    |||||||||||||| ||||||||||| ||||||||||||  |||||| ||||| ||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 31380344 - 31380253
Alignment:
Q  149 ataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 240  Q
    ||||||||||||| |||  ||| || |||||||  || |||| |||||| |||||||||||||  || |||| |||||||| ||||||||||    
T  31380344 ataacaaagaagccgcagacatcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg 31380253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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