View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_104 (Length: 275)

Name: NF9612A_low_104
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_104
NF9612A_low_104
[»] chr5 (5 HSPs)
chr5 (9-273)||(17143022-17143285)
chr5 (187-253)||(24270052-24270118)
chr5 (187-253)||(24346683-24346749)
chr5 (187-273)||(35167556-35167642)
chr5 (187-253)||(41666939-41667005)
[»] chr1 (3 HSPs)
chr1 (177-273)||(39348279-39348375)
chr1 (191-273)||(4112702-4112783)
chr1 (187-257)||(38733223-38733292)
[»] scaffold0692 (1 HSPs)
scaffold0692 (187-273)||(5681-5766)
[»] chr4 (1 HSPs)
chr4 (187-273)||(35788731-35788817)
[»] chr2 (3 HSPs)
chr2 (187-258)||(21383611-21383682)
chr2 (187-226)||(38629913-38629952)
chr2 (187-273)||(16419339-16419424)
[»] scaffold0045 (1 HSPs)
scaffold0045 (176-269)||(41137-41230)
[»] chr8 (1 HSPs)
chr8 (187-273)||(37868510-37868595)
[»] chr7 (1 HSPs)
chr7 (187-273)||(25620208-25620293)
[»] chr3 (2 HSPs)
chr3 (187-273)||(16239663-16239749)
chr3 (187-256)||(54567964-54568032)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 17143022 - 17143285
Alignment:
Q  9 tggtgttcctaacaaaaggaagaaataggaaacattaactactaaatattcaatgagcttattatgatgt-atagagtcctacatcatacatcgaacgat 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17143022 tggtgttcctaacaaaaggaagaaataggaaacattaaccactaaatattcaatgagcttattatgatgttatagagtcctacatcatacatcgaacgat 17143121  T
Q  108 atatagtttgaacatgtatttataagtgaggacaatctttaactcataaatcaatttggtaaggataaattaggctcaacacgatttttaagacggtatc 207  Q
    ||||||||||||||||| ||||||||||| || |||||| | ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  17143122 atatagtttgaacatgtgtttataagtgaagataatcttcacctcataaatcagttttgtaaggataagttaggctcaacacgatttttaagacggtatc 17143221  T
Q  208 agagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
      |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  17143222 --agtctcctccaagatcctttgagctacttgctatcaagtttccgctattgaaccacccaccatt 17143285  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 24270118 - 24270052
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccg 253  Q
    |||||||||||||| |||||||||| |||||||||||||| |||  | || |||||||| |||||||    
T  24270118 cacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccg 24270052  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 24346749 - 24346683
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccg 253  Q
    |||||||||||||| |||||||||| |||||||||||||| |||  | || |||||||| |||||||    
T  24346749 cacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccg 24346683  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 35167642 - 35167556
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||| ||||| | ||||||||||||||||||||||  ||  ||||| |||||||| ||||  | |||| | ||||||||||||    
T  35167642 cacgatttctaagatgatatcagagtctcctccaagatctgttagactacatgctatcatgtttatgttattgagccacccaccatt 35167556  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 41667005 - 41666939
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccg 253  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||  | || |||||||| |||||||    
T  41667005 cacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccg 41666939  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 39348375 - 39348279
Alignment:
Q  177 ttaggctcaacacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||| ||| |||  | || |||||||| |||||| ||||   |||||||||||||    
T  39348375 ttaggcccaacacgatttctaagatggtatcagagcctcctccaaggtccattgggccacctgctatcaggtttccactatcggaccacccaccatt 39348279  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 4112783 - 4112702
Alignment:
Q  191 atttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||| ||||| |||||||||| ||| |||||||||| ||| || || |||||||| |||||||||||  ||||||||||||||    
T  4112783 atttctaagatggtatcagagcctc-tccaagatccattggaccacctgctatcaggtttccgctatcgaaccacccaccatt 4112702  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 38733223 - 38733292
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctat 257  Q
    |||||||| ||||| |||||||||||||| |||||||||| ||| || || |||||||| |||||||||||    
T  38733223 cacgatttctaagatggtatcagagtctc-tccaagatccattggaccacctgctatcaggtttccgctat 38733292  T

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Target: scaffold0692 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 5766 - 5681
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||| | || |||||||| |||||||||||   |||||||||||||    
T  5766 cacgatttctaagatggtatcagagcctc-tccaagatccattgagccacctgctatcaggtttccgctatcggaccacccaccatt 5681  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 35788731 - 35788817
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||| ||||| |||||||||| |||||||||||||| |||  | || |||||||| ||||||| ||| |  ||||||||||||    
T  35788731 cacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccgttatcaggccacccaccatt 35788817  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 21383682 - 21383611
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctatt 258  Q
    |||||||| ||||| |||||||||| |||||||||||||  |||  | || |||||||||||||| ||||||    
T  21383682 cacgatttctaagatggtatcagagcctcctccaagatctgttgggccacctgctatcaagtttctgctatt 21383611  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 38629913 - 38629952
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcc 226  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  38629913 cacgatttttaagatggtatcagagcctcctccaagatcc 38629952  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 16419339 - 16419424
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| |||||||||||  | ||||||||||||    
T  16419339 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgctatcgagccacccaccatt 16419424  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 41230 - 41137
Alignment:
Q  176 attaggctcaac-acgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccac 269  Q
    |||||||||||| ||||||| ||||| |||||||||| ||| |||||||| | |||  | || ||||||||||||| ||||||  ||||||||||    
T  41230 attaggctcaactacgatttctaagatggtatcagagcctc-tccaagattcattgggccacctgctatcaagtttgcgctatcgaaccacccac 41137  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 37868595 - 37868510
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||||||||| ||||||| || ||| |||||||||| |||  | ||  ||||||||||||||||||||   ||||||||||||    
T  37868595 cacgatttttaagatggtatcatagcctc-tccaagatccattgggccacccgctatcaagtttccgctattgggccacccaccatt 37868510  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 25620208 - 25620293
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||  | || |||||||| ||||||||||||   ||||||||||||    
T  25620208 cacgatttctaagatggtatcagagcctc-tccaagatccattgggccacctgctatcaggtttccgctattgggccacccaccatt 25620293  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 16239663 - 16239749
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgctattaaaccacccaccatt 273  Q
    |||||||| ||||| |||||||||| |||||||||||||| ||   | || |||||||| ||||||| |||  | ||||||||||||    
T  16239663 cacgatttctaagatggtatcagagcctcctccaagatccgtttggccacctgctatcaggtttccgttatcgagccacccaccatt 16239749  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 54567964 - 54568032
Alignment:
Q  187 cacgatttttaagacggtatcagagtctcctccaagatcctttgaactacttgctatcaagtttccgcta 256  Q
    |||||||| ||||| |||||||||| ||| |||||||||| |||| | || |||||||| ||||||||||    
T  54567964 cacgatttctaagatggtatcagagcctc-tccaagatccattgagccacctgctatcaggtttccgcta 54568032  T

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