View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_11 (Length: 441)
Name: NF9612A_low_11
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 24 - 418
Target Start/End: Original strand, 17109357 - 17109751
Alignment:
| Q |
24 |
acaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17109357 |
acaatttccttgtaaaattggtcatcagtggtggctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataa |
17109456 |
T |
|
| Q |
124 |
gtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatgga |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17109457 |
gtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatgga |
17109556 |
T |
|
| Q |
224 |
ggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctata |
323 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109557 |
ggattgtctgcacccaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctata |
17109656 |
T |
|
| Q |
324 |
agctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109657 |
agctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaac |
17109751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 28 - 384
Target Start/End: Original strand, 16978029 - 16978385
Alignment:
| Q |
28 |
tttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgt |
127 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || ||||||||||| |
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|
| T |
16978029 |
tttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgt |
16978128 |
T |
|
| Q |
128 |
attaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggat |
227 |
Q |
| |
|
| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
16978129 |
agtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggat |
16978228 |
T |
|
| Q |
228 |
tgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagct |
327 |
Q |
| |
|
||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |
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| T |
16978229 |
tgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagct |
16978328 |
T |
|
| Q |
328 |
gtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaag |
384 |
Q |
| |
|
|||||| ||||||||||||| |||| ||| ||||||| | |||||||||| ||||| |
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|
| T |
16978329 |
atctatagatgattgtccacagttggagtcgttctccgatggaggtttgccatcaag |
16978385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 24 - 384
Target Start/End: Original strand, 17029897 - 17030257
Alignment:
| Q |
24 |
acaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataa |
123 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || ||||||| |
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|
| T |
17029897 |
acaatttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataa |
17029996 |
T |
|
| Q |
124 |
gtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatgga |
223 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
17029997 |
gtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaagga |
17030096 |
T |
|
| Q |
224 |
ggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctata |
323 |
Q |
| |
|
||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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|
| T |
17030097 |
ggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttata |
17030196 |
T |
|
| Q |
324 |
agctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaag |
384 |
Q |
| |
|
|||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| |
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|
| T |
17030197 |
agctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaag |
17030257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 24 - 384
Target Start/End: Original strand, 17048235 - 17048595
Alignment:
| Q |
24 |
acaatttccttgtaaaattggtcatcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataa |
123 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || ||||||| |
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|
| T |
17048235 |
acaatttccttgtaaaattggacatcaccagtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataa |
17048334 |
T |
|
| Q |
124 |
gtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatgga |
223 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
17048335 |
gtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaagga |
17048434 |
T |
|
| Q |
224 |
ggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctata |
323 |
Q |
| |
|
||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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|
| T |
17048435 |
ggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttata |
17048534 |
T |
|
| Q |
324 |
agctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaag |
384 |
Q |
| |
|
|||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| |
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|
| T |
17048535 |
agctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaag |
17048595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 17024324 - 17024395
Alignment:
| Q |
116 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
187 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
17024324 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17024395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
275 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 17035086 - 17035157
Alignment:
| Q |
116 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
187 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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|
| T |
17035086 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
275 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 17089596 - 17089667
Alignment:
| Q |
116 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
187 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17089596 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17089667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
275 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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