View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_118 (Length: 261)
Name: NF9612A_low_118
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_118 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 27313927 - 27313673
Alignment:
| Q |
1 |
acctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgccttttatctaatgtttcatct |
100 |
Q |
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| T |
27313927 |
acctaataaactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgcttttcatctaatgtttcatct |
27313828 |
T |
|
| Q |
101 |
taattgatcatatacnnnnnnngcttcaaatataactccacctattcctcaacatgcattttcatttcaagacaacaacgagatccattaagttacatat |
200 |
Q |
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| T |
27313827 |
taattgatcatatactttttttgcttcaaatataactccacctatccctcaacatacattttcatttcaagacaacaatgagatccattgagttacatat |
27313728 |
T |
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| Q |
201 |
ggtggtgcctcagttaatcttattccaagagttatgttcaaaaagctagggaaag |
255 |
Q |
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| T |
27313727 |
ggtggtgcctcagtcaatcttattccatgagttatgttcaaaaagctagggaaag |
27313673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11827958 - 11828017
Alignment:
| Q |
1 |
acctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
60 |
Q |
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| T |
11827958 |
acctaattgactctaaactaataggcctaatagcatagcccattactttattatctaaca |
11828017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 31611487 - 31611539
Alignment:
| Q |
63 |
gattaggtttcaatcgccttttatctaatgtttcatcttaattgatcatatac |
115 |
Q |
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| T |
31611487 |
gattaggtttcaatagtttttcatcaaatgtttcatcttaatcgatcatatac |
31611539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 11222642 - 11222685
Alignment:
| Q |
123 |
gcttcaaatataactccacctattcctcaacatgcattttcatt |
166 |
Q |
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| T |
11222642 |
gcttcaaatataacttcacctattcctcaacatacatcttcatt |
11222685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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