View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_119 (Length: 260)
Name: NF9612A_low_119
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_119 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 2622028 - 2621780
Alignment:
| Q |
12 |
aatatcagagaagaagaacgtactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatc |
111 |
Q |
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| T |
2622028 |
aatatcagagaagaagaacgtactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatc |
2621929 |
T |
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| Q |
112 |
ggcattccggatgaggaacacgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaaggctt |
211 |
Q |
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| T |
2621928 |
ggcattccggatgaggaacacgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaaggctt |
2621829 |
T |
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| Q |
212 |
ctgacaagggtgtcgagtaacaggacgtgtgttgaaagcataagcagtg |
260 |
Q |
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| T |
2621828 |
ctgacaagggtgtcgagtaacaggacgtgtgttgaaagcataagcagtg |
2621780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 260
Target Start/End: Original strand, 41316639 - 41316867
Alignment:
| Q |
32 |
tactctatcccatagatgcgggtctggcttcttatatacgacaactttgtcaagagcagaaggattagccattttccatcggcattccggatgaggaaca |
131 |
Q |
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| T |
41316639 |
tactctatcccatagatgtggatctggcttcttatatacctccactctgtcaacagaagaaggattggccatcttccaccggcattctgggtgaggaaca |
41316738 |
T |
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| Q |
132 |
cgatgtttttcatattcactcactgtctgttgtattgtagaattgaattttgcttttgaaaggtaaaacacaaaaggcttctgacaagggtgtcgagtaa |
231 |
Q |
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| T |
41316739 |
cgatgcctttcatattcagtcagtgtttgttctgttgtatcattgtattttgcctttgagaagtaaaatacaaaaggcttctgacatggatttcggctaa |
41316838 |
T |
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| Q |
232 |
caggacgtgtgttgaaagcataagcagtg |
260 |
Q |
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| T |
41316839 |
ccggacgcgtgttgaatgcatatgcagtg |
41316867 |
T |
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