View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_12 (Length: 438)
Name: NF9612A_low_12
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 255 - 415
Target Start/End: Original strand, 33399827 - 33399989
Alignment:
| Q |
255 |
aggacagctgattccttccttttgaggtgctataaattgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaga |
354 |
Q |
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| T |
33399827 |
aggacagctgattccttccttttgaggtgctataacttgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaat |
33399926 |
T |
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| Q |
355 |
gtggcttcttttcgttgtagtcttcacataaattcttgaaga--atagaaatgaatctcttca |
415 |
Q |
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| T |
33399927 |
gtggcttcttttcgttgtagtcttcacataaattcttgaagatcatagaaatgaatcttttca |
33399989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 32493717 - 32493567
Alignment:
| Q |
63 |
gccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccataaattctttctcat |
162 |
Q |
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| T |
32493717 |
gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccataaattctttctcat |
32493627 |
T |
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| Q |
163 |
tcttcctataatttgttgctaa-ttttgacttgtttgcctaaaatgccttgcagcttgat |
221 |
Q |
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| T |
32493626 |
tcttcctataatttggtgctaatttttgacttgtttgcctaaaatgccttgcagcttgat |
32493567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 33399698 - 33399795
Alignment:
| Q |
52 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
149 |
Q |
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| T |
33399698 |
aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata |
33399795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 32492895 - 32492827
Alignment:
| Q |
230 |
tggacacaatgctcccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
298 |
Q |
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| T |
32492895 |
tggacgcaatgcccccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa |
32492827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 32492828 - 32492759
Alignment:
| Q |
348 |
aacaagagtggcttcttttcgttgtagtcttcacata--aattcttgaagaatagaaatgaatctcttca |
415 |
Q |
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| T |
32492828 |
aacaagagtggcttcttttcgttgcagtcttcacatataaattcttgaagaatagaaatgaatctcttca |
32492759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 20287476 - 20287513
Alignment:
| Q |
21 |
tcaataaatatgaaagtcaaacagaggggacaagacgg |
58 |
Q |
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| T |
20287476 |
tcaataaatatgaaagtcaaacagaggtgacaagacgg |
20287513 |
T |
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