View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_121 (Length: 260)
Name: NF9612A_low_121
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_121 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 46844891 - 46844638
Alignment:
| Q |
5 |
agaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgttta |
104 |
Q |
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| T |
46844891 |
agaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgttta |
46844792 |
T |
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| Q |
105 |
ggtggaattatgtcacatactcaatcatcgttagcttccaatttaggcatcttttgcgttatataggcatcacgtcctccaacaacatcttctggtcacg |
204 |
Q |
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| T |
46844791 |
ggtggaattatgtcacatactcaatcatccttagcttccaatttaggcatcttgtgc--tatataggcatcacgtcctccaacaacatcctctggtcacg |
46844694 |
T |
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| Q |
205 |
gcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggt |
260 |
Q |
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| T |
46844693 |
gcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggt |
46844638 |
T |
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Target: scaffold0057 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 48945 - 48986
Alignment:
| Q |
195 |
tctggtcacggcattcatggctgcaaaatgccatctcacccc |
236 |
Q |
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| T |
48945 |
tctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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