View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_122 (Length: 259)
Name: NF9612A_low_122
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_122 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 5895487 - 5895313
Alignment:
| Q |
5 |
aacatagacctcgatttaaatcacgtttcgattagtcacgctgctgttaacgcaaggaagtttgaaaagggtggaatggatggtgaggctgtgaaatcca |
104 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5895487 |
aacaaagacctcgattcaaatcacgtttcgattagtcacgatgctgtcaacggaaggaagtttgaaaagtgtggaatggatggtgaggctgtgaaatcca |
5895388 |
T |
|
| Q |
105 |
tggaattgtttgataaggatacatttgagaggatatattctcg-caaatatttcaaattcgccaccctttatcaa |
178 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||| |
|
|
| T |
5895387 |
gggaattgtttgataaggatagatttgagaggatatattctcgaaaaaaatttcaaattccccaccccttatcaa |
5895313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 5895269 - 5895191
Alignment:
| Q |
180 |
atttgttgagttggccttgcaaaatttagaatatgcgccgaataaagctctaatatttttcaggtgggtggagaagagtg |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||| | ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5895269 |
atttgttgagttggccttacaaaatttagaa-atgtgcctagtaaagctttaatatttttcaggtgggtggagaagagtg |
5895191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 5880996 - 5880924
Alignment:
| Q |
65 |
tttgaaaagggtggaatggatggtgaggctgtgaaatccatggaattgtttgataaggatacatttgagagga |
137 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| | | ||| |||||||||||||||||| ||||||||| |
|
|
| T |
5880996 |
tttgaaaagggtggaatgaatggtgatgctgtgaagttgaaggagttgtttgataaggatacagttgagagga |
5880924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University