View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_124 (Length: 258)
Name: NF9612A_low_124
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_124 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 52491072 - 52491207
Alignment:
| Q |
60 |
aacgggaagagaacacacattgtactttgaacgaaggtcaccggagagaggtgcgctaatcaacacacgacgaacgtttggtggggcggtgaaatgaacc |
159 |
Q |
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| T |
52491072 |
aacgggaagagaacgcacgatgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacgacggacgtttgatggggcggtgaaatgaacc |
52491171 |
T |
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| Q |
160 |
ttgcggctcttgtgacggctgcttgaaagaagaaga |
195 |
Q |
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| T |
52491172 |
ttgcggctcttgtgacagctgcttgaaagaagaaga |
52491207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 5404332 - 5404205
Alignment:
| Q |
60 |
aacgggaagagaacacacattgtactttgaacgaaggtcaccggagagaggtgcgctaatcaacacacgacgaacgtttggtggggcggtgaaatgaacc |
159 |
Q |
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|||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||| |||||||||||||||| || |
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| T |
5404332 |
aacgggaagagaacgcacgttgtactttgaacggaggtcaccggaaagaggtgcgctcatcaacacacgacggacgcttgatggggcggtgaaatgagcc |
5404233 |
T |
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| Q |
160 |
ttgcggctcttgtgacggctgcttgaaa |
187 |
Q |
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| T |
5404232 |
ttgcggctcttgcgacggctgcttgaaa |
5404205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 21946304 - 21946227
Alignment:
| Q |
118 |
atcaacacacgacgaacgtttggtggggcggtgaaatgaaccttgcggctcttgtgacggctgcttgaaagaagaaga |
195 |
Q |
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|||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
21946304 |
atcaacacacgacggacgtttggtgtggcggtaaaatgaaccttgcggctcttgcgacggatgcttgaaagaagaaga |
21946227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 30927076 - 30927147
Alignment:
| Q |
60 |
aacgggaagagaacacacattgtactttgaacgaaggtcaccggagagaggtgcgctaatcaacacacgacg |
131 |
Q |
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||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
30927076 |
aacgggaagagaatgcacgttgtactttgaaagaaggtcaccggagagaggttcgctcatcaacacacgacg |
30927147 |
T |
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