View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_129 (Length: 254)
Name: NF9612A_low_129
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_129 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 27508739 - 27508517
Alignment:
| Q |
32 |
tatcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttat |
131 |
Q |
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| T |
27508739 |
tatcaaaagtaagaaggatgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttat |
27508640 |
T |
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| Q |
132 |
ctcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctac |
231 |
Q |
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| T |
27508639 |
ctcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctac |
27508540 |
T |
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| Q |
232 |
cttcttacacaatgtacaataca |
254 |
Q |
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| T |
27508539 |
cttcttaaacaatgtccaataca |
27508517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 27503794 - 27503573
Alignment:
| Q |
33 |
atcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatc |
132 |
Q |
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| T |
27503794 |
atcaaatgtaagatggatgtaattaagtatttgatgatgc-aatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatc |
27503696 |
T |
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| Q |
133 |
tcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacc |
232 |
Q |
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| T |
27503695 |
tcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagatcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacc |
27503596 |
T |
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| Q |
233 |
-ttcttacacaatgtacaataca |
254 |
Q |
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| T |
27503595 |
tttcctaaacaatgtccaataca |
27503573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 254
Target Start/End: Complemental strand, 27524394 - 27524175
Alignment:
| Q |
34 |
tcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatct |
133 |
Q |
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| T |
27524394 |
tcaaatgtatgaaggatgtaactaaatatttgataatgc-aatgagtttttctgtttgtgaaggagagaggaagtttatatatagattttaaagttctct |
27524296 |
T |
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| Q |
134 |
caaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacct |
233 |
Q |
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| T |
27524295 |
caaacccaaatttcaagaaaaactattattgaaggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttagagtgtaccctacct |
27524196 |
T |
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| Q |
234 |
tcttacacaatgtacaataca |
254 |
Q |
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| T |
27524195 |
tcttaaacaatatccaataca |
27524175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 27475853 - 27476059
Alignment:
| Q |
49 |
atgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcct |
148 |
Q |
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| T |
27475853 |
atgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttca |
27475952 |
T |
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| Q |
149 |
agaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacc-ttcttacacaatgta |
247 |
Q |
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| T |
27475953 |
agagaaactattattgaagggtttgatggatagagagcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtc |
27476052 |
T |
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| Q |
248 |
caataca |
254 |
Q |
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||||||| |
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| T |
27476053 |
caataca |
27476059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 243
Target Start/End: Original strand, 27468624 - 27468814
Alignment:
| Q |
53 |
aactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcctagaa |
152 |
Q |
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| T |
27468624 |
aactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagtgtatttatagattttgaagttctctcaaaatcaaatttcaacaa |
27468723 |
T |
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| Q |
153 |
aaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttacacaa |
243 |
Q |
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| T |
27468724 |
aaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaa |
27468814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 27514736 - 27514547
Alignment:
| Q |
52 |
taactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcctaga |
151 |
Q |
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| T |
27514736 |
taactaaatacttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaaga |
27514639 |
T |
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| Q |
152 |
aaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttacacaa |
243 |
Q |
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| T |
27514638 |
gaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaa |
27514547 |
T |
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