View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_136 (Length: 251)

Name: NF9612A_low_136
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_136
NF9612A_low_136
[»] chr3 (18 HSPs)
chr3 (16-242)||(33399476-33399702)
chr3 (16-243)||(14399495-14399722)
chr3 (63-242)||(46992187-46992366)
chr3 (16-242)||(7841909-7842135)
chr3 (16-225)||(36816410-36816619)
chr3 (16-242)||(21955132-21955358)
chr3 (16-242)||(29930309-29930535)
chr3 (16-242)||(29979463-29979689)
chr3 (16-242)||(48249761-48249987)
chr3 (16-223)||(13746615-13746822)
chr3 (19-225)||(77917-78123)
chr3 (16-225)||(7838554-7838763)
chr3 (38-223)||(30946558-30946743)
chr3 (64-242)||(6504897-6505075)
chr3 (38-223)||(3949703-3949888)
chr3 (38-223)||(6741847-6742032)
chr3 (38-223)||(8159899-8160084)
chr3 (61-173)||(25059880-25059992)
[»] chr1 (21 HSPs)
chr1 (1-242)||(26466149-26466390)
chr1 (1-242)||(32106522-32106760)
chr1 (14-242)||(16246646-16246871)
chr1 (27-242)||(25231244-25231458)
chr1 (16-242)||(21943258-21943484)
chr1 (16-242)||(7980106-7980332)
chr1 (16-242)||(50116657-50116883)
chr1 (16-242)||(37015855-37016081)
chr1 (16-242)||(38691833-38692059)
chr1 (16-242)||(46974105-46974331)
chr1 (16-225)||(51663216-51663425)
chr1 (63-134)||(5078984-5079055)
chr1 (16-223)||(29355582-29355789)
chr1 (16-223)||(41454797-41455004)
chr1 (38-223)||(20350416-20350601)
chr1 (16-172)||(13174792-13174948)
chr1 (28-118)||(39914002-39914092)
chr1 (38-223)||(3947377-3947562)
chr1 (38-223)||(3984073-3984258)
chr1 (38-223)||(38775031-38775216)
chr1 (38-223)||(44466542-44466727)
[»] chr5 (16 HSPs)
chr5 (1-227)||(20285965-20286191)
chr5 (25-209)||(23028463-23028654)
chr5 (66-218)||(13157978-13158130)
chr5 (62-242)||(20286449-20286630)
chr5 (16-225)||(18537230-18537439)
chr5 (16-134)||(7020774-7020892)
chr5 (16-242)||(25895995-25896221)
chr5 (38-242)||(1035466-1035670)
chr5 (16-242)||(7799900-7800126)
chr5 (16-134)||(27866739-27866857)
chr5 (16-134)||(34078829-34078947)
chr5 (25-197)||(13567005-13567177)
chr5 (69-223)||(38859137-38859291)
chr5 (16-223)||(37819771-37819978)
chr5 (26-78)||(9376677-9376729)
chr5 (16-110)||(1036424-1036518)
[»] chr4 (12 HSPs)
chr4 (14-206)||(6182653-6182845)
chr4 (16-242)||(18580222-18580448)
chr4 (16-225)||(4976713-4976922)
chr4 (16-225)||(4978848-4979057)
chr4 (16-172)||(11502517-11502673)
chr4 (16-126)||(19072551-19072661)
chr4 (16-242)||(21471735-21471961)
chr4 (63-135)||(4769178-4769250)
chr4 (150-242)||(17140530-17140622)
chr4 (16-225)||(51643392-51643603)
chr4 (38-223)||(49565380-49565565)
chr4 (150-242)||(38463825-38463917)
[»] chr2 (21 HSPs)
chr2 (14-226)||(17997064-17997276)
chr2 (16-242)||(41007874-41008100)
chr2 (63-242)||(12907433-12907612)
chr2 (16-202)||(436292-436478)
chr2 (24-242)||(11692716-11692934)
chr2 (16-242)||(43949176-43949402)
chr2 (63-223)||(7263992-7264152)
chr2 (16-134)||(3802460-3802578)
chr2 (16-242)||(24750599-24750825)
chr2 (16-134)||(27275254-27275372)
chr2 (16-242)||(28354796-28355022)
chr2 (16-225)||(24604983-24605192)
chr2 (63-134)||(45476407-45476478)
chr2 (16-134)||(34920676-34920794)
chr2 (38-223)||(212357-212542)
chr2 (38-223)||(10623370-10623555)
chr2 (38-134)||(5348216-5348312)
chr2 (38-134)||(41561061-41561157)
chr2 (63-223)||(38946723-38946883)
chr2 (152-242)||(34920802-34920892)
chr2 (81-242)||(1100042-1100203)
[»] chr7 (13 HSPs)
chr7 (16-242)||(8400527-8400753)
chr7 (16-242)||(43827500-43827726)
chr7 (16-242)||(47061824-47062050)
chr7 (26-173)||(20908421-20908568)
chr7 (39-242)||(21799953-21800156)
chr7 (26-124)||(3761964-3762062)
chr7 (38-223)||(617665-617850)
chr7 (38-223)||(30787499-30787684)
chr7 (38-223)||(43623051-43623236)
chr7 (38-223)||(45764339-45764524)
chr7 (64-223)||(42500367-42500526)
chr7 (14-118)||(8194172-8194276)
chr7 (25-109)||(16794516-16794600)
[»] chr8 (15 HSPs)
chr8 (16-242)||(7168841-7169067)
chr8 (16-225)||(35965639-35965848)
chr8 (26-242)||(14401676-14401894)
chr8 (16-242)||(39751922-39752148)
chr8 (63-242)||(45455317-45455496)
chr8 (38-172)||(22580914-22581048)
chr8 (16-242)||(43689065-43689291)
chr8 (16-225)||(43370725-43370934)
chr8 (80-202)||(2145948-2146070)
chr8 (38-223)||(7341039-7341224)
chr8 (38-223)||(8422772-8422957)
chr8 (38-223)||(30304526-30304711)
chr8 (38-223)||(32377824-32378009)
chr8 (38-223)||(32431781-32431966)
chr8 (38-134)||(1115821-1115917)
[»] scaffold0219 (1 HSPs)
scaffold0219 (16-242)||(17010-17236)
[»] chr6 (12 HSPs)
chr6 (16-242)||(18606937-18607163)
chr6 (16-242)||(24220107-24220335)
chr6 (63-172)||(31147333-31147442)
chr6 (16-223)||(28250856-28251063)
chr6 (63-225)||(7362137-7362299)
chr6 (16-202)||(29287842-29288028)
chr6 (16-134)||(21358241-21358359)
chr6 (16-134)||(23962223-23962341)
chr6 (38-223)||(1611667-1611852)
chr6 (58-173)||(34111598-34111713)
chr6 (150-242)||(35243544-35243636)
chr6 (150-223)||(13387722-13387795)
[»] scaffold0116 (1 HSPs)
scaffold0116 (16-242)||(12203-12429)
[»] scaffold0341 (1 HSPs)
scaffold0341 (16-134)||(16251-16369)
[»] scaffold0494 (1 HSPs)
scaffold0494 (16-223)||(1841-2048)
[»] scaffold0340 (1 HSPs)
scaffold0340 (63-242)||(111-290)
[»] scaffold0101 (1 HSPs)
scaffold0101 (38-223)||(33769-33954)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 33399702 - 33399476
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  33399702 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacgtacaagcttcttgccatcctcctttaatctacccgc 33399603  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  33399602 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgcttgcctactaagatatccacga 33399503  T
Q  216 accatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||| |||||    
T  33399502 accatgaacatacacctacattttctt 33399476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 14399722 - 14399495
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| |||||| | |||||||||| ||    
T  14399722 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatccttctttaatctaccggc 14399623  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||  | ||||||||||||||||| ||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  14399622 aagaatgtgtccttctaaagccggctccatggcatggttgtgaactccatttagaatgttcaatccccattcctttgtttgcttactttgatatccacta 14399523  T
Q  216 accatgaacatacacctacatattcttc 243  Q
    | |||||||| ||||| |||| ||||||    
T  14399522 atcatgaacaaacacccacattttcttc 14399495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 46992187 - 46992366
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    | | |||| | |||||||||||||    
T  46992187 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 46992286  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  46992287 cattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 46992366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 7841909 - 7842135
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||  ||    
T  7841909 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacaggc 7842008  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| |    
T  7842009 aagaatgtgtccttctaaagccggcttcatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccacta 7842108  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  7842109 atcatgaacaagcacccacattttctt 7842135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 36816410 - 36816619
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  36816410 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 36816509  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  36816510 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 36816609  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  36816610 atcatgaaca 36816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 21955132 - 21955358
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  21955132 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 21955231  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||  ||||||| ||||| |    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| |    
T  21955232 aataatgtgtccttctagagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttacttactttgatatccacta 21955331  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  21955332 atcatgaacaagcacccacattttctt 21955358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 29930535 - 29930309
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||| | | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||||||||||  |    
T  29930535 gtcttttgttcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgcc 29930436  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  29930435 aagaatgtgtccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 29930336  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  29930335 atcatgaacaagcacccacattttctt 29930309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 29979689 - 29979463
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||| | | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||||||||||  |    
T  29979689 gtcttttgttcttcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgcc 29979590  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  29979589 aagaatgtgtccttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 29979490  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  29979489 atcatgaacaagcacccacattttctt 29979463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 48249761 - 48249987
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| | |||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||  ||||||| | |||||| |||||||||| ||    
T  48249761 gtcttttgtttttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacagtcttcttgtcgtcctcctttaatctaccggc 48249860  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| || ||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  48249861 aagaatgtgtccttataaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 48249960  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  48249961 atcatgaacaagcacccacattttctt 48249987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 13746615 - 13746822
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  13746615 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 13746714  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  13746715 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 13746814  T
Q  216 accatgaa 223  Q
    | ||||||    
T  13746815 atcatgaa 13746822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 77917 - 78123
Alignment:
Q  19 ttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaag 118  Q
    ||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | || ||| |||||||||| ||||     
T  77917 ttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcaat 78016  T
Q  119 catgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaacc 218  Q
     ||||||| |||||||    | | ||||   ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |    
T  78017 aatgtgtccttctaaagccggctccatcaaatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatc 78116  T
Q  219 atgaaca 225  Q
    |||||||    
T  78117 atgaaca 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 7838763 - 7838554
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | |||||||     |||||||||||||||| ||||| ||||||| | |||||| ||| |||||| |     
T  7838763 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatattgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgga 7838664  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||| ||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  7838663 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccactaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 7838564  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  7838563 atcatgaaca 7838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 30946558 - 30946743
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| |||||||| |||||||||| ||||| ||||||| |||||||       
T  30946558 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcatcctcctttaatctaccggcaagaatgtgtccttctaaagcc 30946657  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30946658 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 6504897 - 6505075
Alignment:
Q  64 tcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactcc 163  Q
    ||||||||||||||  ||||| ||||||  | |||||| ||| |||||| ||||| ||||||| |||||||    | | |||| | ||||||||||||||    
T  6504897 tcttggtcaagtcatgtacaatcttcttttcgtcctcctttagtctaccggcaagaatgtgtcattctaaagccggctccatcgcatggttgtgaactcc 6504996  T
Q  164 attaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  6504997 attaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 6505075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 3949888 - 3949703
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  3949888 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 3949789  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3949788 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 6742032 - 6741847
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  6742032 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 6741933  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  6741932 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 6741847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 8159899 - 8160084
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  8159899 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 8159998  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8159999 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8160084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 25059880 - 25059992
Alignment:
Q  61 aactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaac 160  Q
    ||||||||||||||||||||| || || |||| | |||| | |||||||  ||||||| ||||| | | |||||  | || ||||||  |||||||||||    
T  25059880 aactcttggtcaagtcacatataatctccttgtcgtccttcattaatctttccgcaagaatgtgccctgctaaatatggtaacatcttatggttgtgaac 25059979  T
Q  161 tccattaagaata 173  Q
     ||||||||||||    
T  25059980 accattaagaata 25059992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 26466149 - 26466390
Alignment:
Q  1 ttgtcttgtaattttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctc 100  Q
    ||||| || ||| |||| ||||| |||||||||| |||||||||||| | |||||||||  | ||||||||||||||| ||||| ||||||  |||||||    
T  26466149 ttgtcatgcaatcttgttttttgttcttcaaatttaacaaaatatttcttggaagcaccttagtcttggtcaagtcacgtacaatcttcttatcatcctc 26466248  T
Q  101 cgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgccta 200  Q
    | |||||||||||||||||||||||| |||||||    | | |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  26466249 ctttaatctacccgcaagcatgtgtcattctaaagccggctccatctcatggttgtgaactccattaagaatgtttaatctccaatcatttgtttgccta 26466348  T
Q  201 ctaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||| ||||||| |||||||||||||||||| |||||    
T  26466349 ctaagatatccacgaacaatgaacatacacctacattttctt 26466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32106522 - 32106760
Alignment:
Q  1 ttgtcttgtaattttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctc 100  Q
    |||||||| ||| |||||||||| |||||||||| |||||  |||||||   |||||||||||||||||||||||||||||||||||| ||| ||| |||    
T  32106522 ttgtcttgcaatcttgtcttttgctcttcaaatttaacaac-tattttttcaaagcaccaaactcttggtcaagtcacatacaagctttttgtcattctc 32106620  T
Q  101 cgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgccta 200  Q
    | |||||||||| |||| |||||||| |||||||||| | | |||||| || ||||||||||  ||||||||||| |||||| |||||||||||| |||     
T  32106621 ctttaatctaccagcaatcatgtgtccttctaaacttggctccatctcatgattgtgaactc--ttaagaatattcaatctccaatcatttgtttacctt 32106718  T
Q  201 ctaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||| |||||||||||||||| |||| |||| |||||    
T  32106719 ctaagatatccacgaaccatgaacattcacccacattttctt 32106760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 16246646 - 16246871
Alignment:
Q  14 ttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctaccc 113  Q
    |||||||||  |||||||||| ||||||||||| |||| | |||||   || ||||| ||||||| ||||| ||||||| |||||||  ||||||||||     
T  16246646 ttgtctttttctcttcaaatttaacaaaatattcttgg-atgcaccttgcttttggt-aagtcacgtacaatcttcttgtcatcctcttttaatctaccg 16246743  T
Q  114 gcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 213  Q
    | ||||||||||| ||||||| |  | | |||| | |||||||||||| |||||| ||| || |||||| | ||||||||||||||||  ||||||||||    
T  16246744 gtaagcatgtgtccttctaaagtcggctccatcgcatggttgtgaacttcattaacaat-ttcaatctccattcatttgtttgcctacacagatattcac 16246842  T
Q  214 gaaccatgaacatacacctacatattctt 242  Q
     ||||||||||||||||| |||| |||||    
T  16246843 taaccatgaacatacacccacattttctt 16246871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 25231458 - 25231244
Alignment:
Q  27 ttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtc 126  Q
    |||||||| |||||||||||| |   |||||||||||  ||||||||||||| ||||| |||||||  ||||||| || ||||||| |||||||||||||    
T  25231458 ttcaaatttaacaaaatatttgttaaaagcaccaaacatttggtcaagtcacgtacaatcttcttggtatcctcccttgatctacctgcaagcatgtgtc 25231359  T
Q  127 tttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacat 226  Q
     ||| |||||| | | | ||||  |||||||||||||||| | |||||| |||||| | |||||||||| |||||||| |||| || |||  ||| ||||    
T  25231358 cttccaaacttggcttcgtctcacggttgtgaactccattgaaaatattcaatctccagtcatttgtttccctactaatatatccaggaagaatg-acat 25231260  T
Q  227 acacctacatattctt 242  Q
    ||||| |||| |||||    
T  25231259 acacccacattttctt 25231244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 21943258 - 21943484
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||| | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| |     
T  21943258 gtcttttgttcttcaaatttatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggt 21943357  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| ||||||||   | | |||| | ||||||||||||||||| ||||| || |||| | | || ||||||||||||||  ||||| ||| |    
T  21943358 aagaatgtgtccttctaaacccggctccatcccatggttgtgaactccattgagaatgttcaatccccattcctttgtttgcctactttgatatccacta 21943457  T
Q  216 accatgaacatacacctacatattctt 242  Q
    ||||| ||||  |||| |||| |||||    
T  21943458 accataaacaagcacccacattttctt 21943484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 7980106 - 7980332
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| |||||||| |||||||||| ||    
T  7980106 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatcctcctttaatctaccggc 7980205  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||      | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  7980206 aagaatgtgtccttctaaagccgactgcattgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 7980305  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | |||||||| ||||| |||| |||||    
T  7980306 atcatgaacaaacacccacattttctt 7980332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 50116657 - 50116883
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| | ||||||||||||||||||  |||| ||||||| | |||||| |||||||||| ||    
T  50116657 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatctaactcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccggc 50116756  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | |||| |||||||||||||||||| || |||||| | || ||| ||||| ||||  ||||| ||| |    
T  50116757 aagaatgtgtccttctaaagccggctccatcgcatggtagtgaactccattaagaatgttcaatctccattcctttatttgcttactttgatatccacta 50116856  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  50116857 atcatgaacaagcacccacattttctt 50116883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 37016081 - 37015855
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   ||||||||||||||||  |||| ||||||| | |||||| |||||||||| ||    
T  37016081 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgcacaatcttcttgtcgtcctcctttaatctaccggc 37015982  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  37015981 aagaatgtgtccttctaaagccagctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 37015882  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  37015881 atcatgaacaagcacccacattttctt 37015855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 38691833 - 38692059
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| | |||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||||| |||| ||    
T  38691833 gtcttttgttattcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggc 38691932  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| | ||||| ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  38691933 aagaacgtgtccttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 38692032  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | |||||||| ||||| |||| |||||    
T  38692033 atcatgaacaaacacccacattttctt 38692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 46974331 - 46974105
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||| ||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||||| |||| ||    
T  46974331 gtcttttgttctttaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatgtaccggc 46974232  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| ||||||| |  | | |||| | ||||||| ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  46974231 aagaatgtgtccttctaaagtcggctccatcgcatggttgtaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 46974132  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | |||||||| ||||| |||| |||||    
T  46974131 atcatgaacaaacacccacattttctt 46974105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 51663425 - 51663216
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||| | ||||| ||||||| | |||||| |||||||||| ||    
T  51663425 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcgcgtacaatcttcttgtcctcctcctttaatctaccagc 51663326  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||| ||||||||||||| || |||| | | || ||||||||| ||||  ||||||||| |    
T  51663325 aagaatgtgtcattctaaagccggcttcatcgcatggttgtgagctccattaagaatgttcaatccccattcttttgtttgcttactttgatattcacta 51663226  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  51663225 atcatgaaca 51663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 5079055 - 5078984
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaa 134  Q
    |||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||| ||||||| |||||||    
T  5079055 ctcttggtcaagtcacgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtgtccttctaaa 5078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 29355582 - 29355789
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  29355582 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 29355681  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  29355682 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 29355781  T
Q  216 accatgaa 223  Q
    | ||||||    
T  29355782 atcatgaa 29355789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 41455004 - 41454797
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  41455004 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 41454905  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  41454904 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 41454805  T
Q  216 accatgaa 223  Q
    | ||||||    
T  41454804 atcatgaa 41454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 20350601 - 20350416
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  20350601 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 20350502  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  20350501 ggctccatgggatggttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 20350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 13174948 - 13174792
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   ||||||||||||||||  |||| ||||||| | |||||| |||||||||| ||    
T  13174948 gtcttttgttcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccagc 13174849  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaat 172  Q
     || ||||||| | |||||    | | |||| | |||||||||||||||||||||||    
T  13174848 gagaatgtgtcctcctaaagccggctccatcgcatggttgtgaactccattaagaat 13174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 39914092 - 39914002
Alignment:
Q  28 tcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaag 118  Q
    ||||||||  ||||||||||||  |  |||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||| | ||||||    
T  39914092 tcaaattcgtcaaaatatttttttgttgcaccaaactcttggtcaagtcacgtacaatcttcttgtcatccttcattaatcttctcgcaag 39914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 3947377 - 3947562
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  3947377 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 3947476  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3947477 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3947562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 3984258 - 3984073
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  3984258 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 3984159  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3984158 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 38775031 - 38775216
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  38775031 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 38775130  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38775131 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 44466727 - 44466542
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  44466727 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 44466628  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44466627 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20286191 - 20285965
Alignment:
Q  1 ttgtcttgtaattttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctc 100  Q
    ||||| || ||| |||||||||| |||||||||| |||||||||||| | |||||||||  ||||||||| ||||||||||||| ||||||| |||||||    
T  20286191 ttgtcatgcaatcttgtcttttgctcttcaaatttaacaaaatatttcttggaagcaccttactcttggttaagtcacatacaatcttcttgtcatcctc 20286092  T
Q  101 cgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgccta 200  Q
    | |||||||||||||||||||||||| |||||||    | | |||| | ||||||||||||||||||||||| || | | || | |||||||||||||||    
T  20286091 ctttaatctacccgcaagcatgtgtccttctaaagccggctccatcacatggttgtgaactccattaagaatgttcagtttccattcatttgtttgccta 20285992  T
Q  201 ctaagatattcacgaaccatgaacata 227  Q
    ||||||||| |||  ||||||||||||    
T  20285991 ctaagatatccacttaccatgaacata 20285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 23028463 - 23028654
Alignment:
Q  25 tcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcaca-------tacaagcttcttgccatcctccgttaatctacccgcaa 117  Q
    |||||||||| || ||||||||||| | ||||| ||||||||||||||||||||        ||||| ||||||| |||||||| |||||||||||||||    
T  23028463 tcttcaaatttaataaaatattttttgaaagcatcaaactcttggtcaagtcaccaatcatgtacaatcttcttgtcatcctcccttaatctacccgcaa 23028562  T
Q  118 gcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 209  Q
    ||||||||  ||||||||||   | |||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  23028563 gcatgtgttcttctaaacttgccttcatctcatggttgtgaactccattaataatattcaatctccaatcatttgtttccctactaagatat 23028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 13157978 - 13158130
Alignment:
Q  66 ttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccat 165  Q
    ||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||| ||| || |||| ||   | ||| || ||||||||||||||||    
T  13157978 ttggtgaagtcacatacaagtttcttgtcatcctcctttaatctacccgcaagcatgcgtccttttaaatttgactccatttcatggttgtgaactccat 13158077  T
Q  166 taagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaacc 218  Q
    ||||||| || |||||| |||||||||||||| || |||||||| ||||||||    
T  13158078 taagaatgttcaatctccaatcatttgtttgcttattaagatatccacgaacc 13158130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 20286630 - 20286449
Alignment:
Q  62 actcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaact 161  Q
    ||||||||||||||||  ||||| ||| ||| |||||||| |||||||||||||||||||||||| |||||||    | | |||| | ||||||| ||||    
T  20286630 actcttggtcaagtcatgtacaatctttttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccggctccatcacatggttgtaaact 20286531  T
Q  162 ccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac-gaaccatgaacatacacctacatattctt 242  Q
    ||||||||||| || |   || | |||||||||||||||||||||||| |||  | ||||||||||||||| |||| |||||    
T  20286530 ccattaagaatgttcaggttccattcatttgtttgcctactaagatatccacttacccatgaacatacacccacattttctt 20286449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 18537230 - 18537439
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |  ||||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  18537230 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatctcactcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 18537329  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||  | | |  ||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| |    
T  18537330 aagaatgtgtccttctaaagctggctcaatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgttttcttactttgatatccacta 18537429  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  18537430 atcatgaaca 18537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 7020774 - 7020892
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||||||||| ||||||| | |||||| |||||||||| ||    
T  7020774 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttcctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctaccggc 7020873  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  7020874 aagaatgtgtccttctaaa 7020892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 25895995 - 25896221
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| | |||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  25895995 gtcttttgtttttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 25896094  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  25896095 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 25896194  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  25896195 atcatgaacaagcacccacattttctt 25896221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 1035466 - 1035670
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| |||||  |||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  1035466 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1035565  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacata 237  Q
     | | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| ||||     
T  1035566 ggctccatggcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacatt 1035665  T
Q  238 ttctt 242  Q
    |||||    
T  1035666 ttctt 1035670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 7799900 - 7800126
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| | |||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||| ||||||  |    
T  7799900 gtcttttgtttttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgac 7799999  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||  | | || ||||||||| ||||  ||||| ||| |    
T  7800000 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaattcccattcctttgtttgcttactttgatatccacta 7800099  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  7800100 atcatgaacaagcacccacattttctt 7800126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 27866739 - 27866857
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  27866739 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 27866838  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  27866839 aagaatgtgtccttctaaa 27866857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 34078947 - 34078829
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  34078947 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 34078848  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  34078847 aagaatgtgtccttctaaa 34078829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 13567005 - 13567177
Alignment:
Q  25 tcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtg 124  Q
    |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||| | |||||||||| ||||| |||||    
T  13567005 tcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtccttctttaatctaccggcaagaatgtg 13567104  T
Q  125 tctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgc 197  Q
    || |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || |||||||||    
T  13567105 tccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgc 13567177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 38859137 - 38859291
Alignment:
Q  69 gtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaa 168  Q
    |||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    | | |||    |||||||||||||||||||    
T  38859137 gtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaa 38859236  T
Q  169 gaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    |||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  38859237 gaatgttcaatctccattcttttgtttgcttactttgatatccactaatcatgaa 38859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 37819771 - 37819978
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||    
T  37819771 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggc 37819870  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||  ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  37819871 aacaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 37819970  T
Q  216 accatgaa 223  Q
    | ||||||    
T  37819971 atcatgaa 37819978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 9376677 - 9376729
Alignment:
Q  26 cttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcac 78  Q
    ||||||||||| ||||||||| || ||  ||||||||||||||||||||||||    
T  9376677 cttcaaattcatcaaaatattcttaggtggcaccaaactcttggtcaagtcac 9376729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 1036518 - 1036424
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatcta 110  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| |||||  |||||| | |||||| ||||||||    
T  1036518 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatcta 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 6182845 - 6182653
Alignment:
Q  14 ttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctaccc 113  Q
    |||||||||  |||| ||||| |||||||||||||| | |||||||||||||||||||||||||  |||||  |||||| || | ||| ||||| |||      
T  6182845 ttgtctttttctcttaaaatttaacaaaatattttttgaaagcaccaaactcttggtcaagtcatgtacaattttcttgtcaccatcccttaatatactt 6182746  T
Q  114 gcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaaga 206  Q
    |||||||| |||| |||||||||| | | |||||| |||||||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||    
T  6182745 gcaagcatatgtccttctaaacttggcttcatctcatggttgtgaactccatcaagaatattcaatctccaatcgtttgtttccctactaaga 6182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 18580222 - 18580448
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||||||||| ||||||| | |||||| |||||||| | ||    
T  18580222 gtctttagttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctatcggc 18580321  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||  | ||||||||||||||||||||||| |||||||   | || ||||||||| ||||  ||||| ||| |    
T  18580322 aagaatgtgtcattctaaagccggcttcattgcatggttgtgaactccattaagaatgtttaatcctcattcctttgtttgcttactttgatatccacta 18580421  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  18580422 atcatgaacaagcacccacattttctt 18580448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 4976922 - 4976713
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||| |||||| ||    
T  4976922 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 4976823  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| |||||||||||||||    | | |||| | ||||||  ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  4976822 aagaatgtgtctttctaaagccggctccatcgcatggttgcaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 4976723  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  4976722 atcatgaaca 4976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 4978848 - 4979057
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | || ||| ||| ||| |  ||    
T  4978848 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcatcctttagtctgctggc 4978947  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| ||||||| |  | | |||| | |||||| |||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  4978948 aagaatgtgtccttctaaagtcggctccatcgcatggttgggaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 4979047  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  4979048 atcatgaaca 4979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 11502673 - 11502517
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | || ||| |||||||||| ||    
T  11502673 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggc 11502574  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaat 172  Q
    | | ||||||| |||||||    | | |||| | ||| |||||||||||||||||||    
T  11502573 atgaatgtgtccttctaaagccggctccatcgcatgggtgtgaactccattaagaat 11502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 19072551 - 19072661
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| | |||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  19072551 gtcttttgtttttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 19072650  T
Q  116 aagcatgtgtc 126  Q
    ||| |||||||    
T  19072651 aagaatgtgtc 19072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 21471961 - 21471735
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| || ||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||| |||| |  |    
T  21471961 gtcttttgttcatcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttattctatcttc 21471862  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| |||||||||| |||| ||   | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  21471861 aagaatgtgtctttttaaagttgtctccattgtatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 21471762  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  21471761 atcatgaacaagcacccacattttctt 21471735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 4769250 - 4769178
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaac 135  Q
    |||||||||||||||| ||||| ||||||| | |||||| |||||||||| | ||| ||||||| ||||||||    
T  4769250 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttctaaac 4769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 17140622 - 17140530
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| ||||||||||| ||| | |||| |||||    
T  17140622 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccatgaacaaacatccacattttctt 17140530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 51643392 - 51643603
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||||| | |||||     |||||||||||||||| ||||| ||||||| | |||||| |||||||||  ||    
T  51643392 gtcttttgttcttcaaatgtatcaaaatattttttgaaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggc 51643491  T
Q  116 aagcatgtgtctttctaaa-cttcgttacatctcttggttgtg-aactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 213  Q
    ||| ||||||| || |||| |   | | |||| | || ||||| ||||||||||||||| || |||||| | || ||||||||| ||||  ||||| |||    
T  51643492 aagaatgtgtccttataaagccgggctccatcgcatgtttgtgaaactccattaagaatgttcaatctcaattcctttgtttgcttactttgatatccac 51643591  T
Q  214 gaaccatgaaca 225  Q
     || ||||||||    
T  51643592 taatcatgaaca 51643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 49565380 - 49565565
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||| | ||||| ||||||| |||||||       
T  49565380 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccttctaaagcc 49565479  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  49565480 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 49565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 38463825 - 38463917
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  38463825 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 38463917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 17997064 - 17997276
Alignment:
Q  14 ttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctaccc 113  Q
    |||||||||| |||||||||| | |||||||||| | |||||||||   |||||||||||||||| ||||| ||||||  |||||||| ||||||||||     
T  17997064 ttgtcttttgctcttcaaatttatcaaaatatttcttggaagcaccttgctcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacca 17997163  T
Q  114 gcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 213  Q
    ||||||||||||| |||||||    | | |||| | |||||| ||||| ||| |||||| || |||||| | || |||||||| |||||||||||| |||    
T  17997164 gcaagcatgtgtccttctaaagccggctccatcgcatggttgcgaacttcatgaagaatgttcaatctccattcctttgtttgtctactaagatatccac 17997263  T
Q  214 gaaccatgaacat 226  Q
     |||| |||||||    
T  17997264 taaccttgaacat 17997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 41007874 - 41008100
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  41007874 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 41007973  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | |||||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| |    
T  41007974 aagaatgtgtcattctaaagccggctacatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccacta 41008073  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  41008074 atcatgaacaagcacccacattttctt 41008100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 12907433 - 12907612
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    | | |||| | |||||||||||||    
T  12907433 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 12907532  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    |||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  12907533 cattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 12907612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 436478 - 436292
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  436478 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 436379  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 202  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  436378 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 436292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 11692716 - 11692934
Alignment:
Q  24 gtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgt 123  Q
    ||||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||    
T  11692716 gtcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgt 11692815  T
Q  124 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    ||| ||||||| |  | |  ||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||    
T  11692816 gtccttctaaagtcggctcgatcacatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaa 11692915  T
Q  224 catacacctacatattctt 242  Q
    ||  |||| |||| |||||    
T  11692916 caagcacccacattttctt 11692934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 43949176 - 43949402
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||  ||||| ||||||||| |||||| |||||||||| ||    
T  43949176 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgccgtcctcctttaatctaccggc 43949275  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | | || | ||||||||||||||||||| ||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  43949276 aagaatgtgtccttctaaagccggctccttcgcatggttgtgaactccattaataatgttcaatccccattcctttgtttgcttactttgatatccacta 43949375  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  43949376 atcatgaacaagcacccacattttctt 43949402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 7264152 - 7263992
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    ||| |||    |||||||||||||    
T  7264152 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggttccatgagatggttgtgaactc 7264053  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7264052 cattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 3802460 - 3802578
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  3802460 gtctttggttcttcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 3802559  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  3802560 aagaatgtgtccttctaaa 3802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 24750825 - 24750599
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||| |||||| |||  ||||| ||||||| |||||||| |||||||||| ||    
T  24750825 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctctcggtcaattcatgtacaatcttcttgtcatcctcctttaatctaccggc 24750726  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  24750725 aagaatgtgtccttctaaatccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 24750626  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  24750625 atcatgaacaagcacccacattttctt 24750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 27275254 - 27275372
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  27275254 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 27275353  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  27275354 aagaatgtgtccttctaaa 27275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 28354796 - 28355022
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||  |||||||||  | |||||||||| | ||||||| |   ||| |||||||||||| ||||| ||||||| | |||||| ||| |||||| ||    
T  28354796 gtcttttattcttcaaatgtatcaaaatatttcttggaagcatcttgctcatggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccagc 28354895  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  28354896 aagaatgtgtcattctaaagcaggctccatcgcatggttatgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 28354995  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  28354996 atcatgaacaagcacccacattttctt 28355022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 24604983 - 24605192
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| |||||  |||||| | |||||| ||| ||||||  |    
T  24604983 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaattttcttgtcgtcctcctttagtctaccgac 24605082  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||  |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  24605083 aagaatgtgtacttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 24605182  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  24605183 atcatgaaca 24605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 45476478 - 45476407
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaa 134  Q
    |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    
T  45476478 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 45476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 34920676 - 34920794
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||||| |||| |     
T  34920676 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggt 34920775  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  34920776 aagaatgtgtccttctaaa 34920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 212357 - 212542
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  212357 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 212456  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  212457 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 10623370 - 10623555
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  10623370 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 10623469  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  10623470 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 10623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 5348312 - 5348216
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaa 134  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    
T  5348312 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 5348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 41561157 - 41561061
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaa 134  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    
T  41561157 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 41561061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 38946883 - 38946723
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||| | |||||||   |||||| |||||||||| ||||| ||||||| |||||||    | | |||    |||||||||||||    
T  38946883 ctcttggtcaagtcacgtacgatcttcttgttgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactc 38946784  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38946783 cattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38946723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 34920802 - 34920892
Alignment:
Q  152 gttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  34920802 gttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 34920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 1100042 - 1100203
Alignment:
Q  81 acaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatc 180  Q
    |||| ||||||| | |||||| |||||||| | ||||| |||||||  ||||||    | | |||| | ||||||||||||||||||||||| || ||||    
T  1100042 acaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccatctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatc 1100141  T
Q  181 tcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
     | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  1100142 cccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 1100203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 8400753 - 8400527
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||| | |||||||||||| || | || |   |||||||||||||||| ||||| ||||||| |||||||| ||||| |||| ||    
T  8400753 gtcttttgttcttcaaatttatcaaaatattttttggtaacatcttgctcttggtcaagtcacctacaatcttcttgtcatcctcctttaatgtaccagc 8400654  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||| | ||| || |||| | | || ||||||||||||||||||||| ||| |    
T  8400653 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattgaaaatgttcaatccccattcttttgtttgcctactaagatatccacta 8400554  T
Q  216 accatgaacatacacctacatattctt 242  Q
    ||||||||||  |||| |||| |||||    
T  8400553 accatgaacaagcacccacattttctt 8400527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 43827500 - 43827726
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||| | |||||||||| | ||||||| |   | |||||||||||||| ||||| ||||||  | |||||| |||||||||| |     
T  43827500 gtcttttgttcttcaaatttatcaaaatatttcttggaagcatcttgcacttggtcaagtcacgtacaatcttcttttcgtcctcctttaatctaccggt 43827599  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||  | | | | || | ||||||||||||||||||||||| || |||| | | || |||||||| |||||||||||| ||| |    
T  43827600 aagaatgtgtcattctaaagctggctccttcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgtctactaagatatccacta 43827699  T
Q  216 accatgaacatacacctacatattctt 242  Q
    |||||||||| ||||| |||| |||||    
T  43827700 accatgaacaaacacccacattttctt 43827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 47062050 - 47061824
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||||||||| ||| ||| | |||||| |||||||||| ||    
T  47062050 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatctttttgtcgtcctcctttaatctaccggc 47061951  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| ||| ||| |  | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| |    
T  47061950 aagaatgtgtccttcaaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccacta 47061851  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  47061850 atcatgaacaagcacccacattttctt 47061824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 20908421 - 20908568
Alignment:
Q  26 cttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgt 125  Q
    ||||||||||  ||||||||||||  |  |||||||||||||||| |||||||  |||| ||||||| |||||||| ||||||| || ||||| |||||     
T  20908421 cttcaaattcgtcaaaatatttttttgttgcaccaaactcttggtaaagtcacgcacaatcttcttgtcatcctcccttaatcttcctgcaagaatgtgc 20908520  T
Q  126 ctttctaaacttcgttacatctcttggttgtgaactccattaagaata 173  Q
    | ||||||  ||     | |||| ||||||||||||||||||||||||    
T  20908521 ccttctaacattgccgtcgtctcatggttgtgaactccattaagaata 20908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 21800156 - 21799953
Alignment:
Q  39 aaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttc 138  Q
    ||||||||||| ||| |||||   |||||| | ||||||| || ||  ||||||  ||||||| ||||||||||  ||| |||||||| |||||||        
T  21800156 aaaatattttttggatgcaccttgctcttgattaagtcacgtataattttcttgttatcctcctttaatctaccgacaaacatgtgtccttctaaagccg 21800057  T
Q  139 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatat 238  Q
      | |||| | ||||||||||||||||||| ||| || |||||| | |  ||||||| ||||||||||||| ||| |||||||||||| |||| |||| |    
T  21800056 actccatcgcatggttgtgaactccattaacaatgttcaatctccattgctttgttttcctactaagatatccactaaccatgaacatgcacccacattt 21799957  T
Q  239 tctt 242  Q
    ||||    
T  21799956 tctt 21799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 3762062 - 3761964
Alignment:
Q  26 cttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtg 124  Q
    ||||||||||| |||||||||||| ||  ||| ||||||||||||||||| || || || ||| ||| |||| ||| ||||||| ||| ||||||||||    
T  3762062 cttcaaattcatcaaaatattttttggctgcatcaaactcttggtcaagttacctagaatctttttgtcatcttcccttaatcttccctcaagcatgtg 3761964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 617665 - 617850
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  617665 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 617764  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  617765 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 30787684 - 30787499
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  30787684 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 30787585  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30787584 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30787499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 43623051 - 43623236
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  43623051 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 43623150  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  43623151 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 43623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 45764524 - 45764339
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  45764524 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagcc 45764425  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  45764424 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 45764339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 42500526 - 42500367
Alignment:
Q  64 tcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactcc 163  Q
    |||| |||||||||| ||||| ||||||| | |||||| |||||||||| ||||| |||| || |||||||    | | |||    ||||||||||||||    
T  42500526 tctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtttccttctaaagccggctccatgggatggttgtgaactcc 42500427  T
Q  164 attaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    ||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  42500426 attaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaa 42500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 8194172 - 8194276
Alignment:
Q  14 ttgtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctaccc 113  Q
    |||||||||  ||||||||||   |||||||||||| ||   |||| |||| ||| ||||||||  ||||| ||||||| | |||||| ||||||| |||    
T  8194172 ttgtcttttcttcttcaaatttgtcaaaatattttttggtttcaccgaactattgctcaagtcatgtacaatcttcttgtcgtcctccattaatcttccc 8194271  T
Q  114 gcaag 118  Q
    |||||    
T  8194272 gcaag 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 16794516 - 16794600
Alignment:
Q  25 tcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatct 109  Q
    ||||||||||   |||||||||||| ||   ||||||||| ||||||||||||  ||||| ||||||| | |||||| |||||||    
T  16794516 tcttcaaatttgtcaaaatattttttggtttcaccaaactattggtcaagtcatgtacaatcttcttgtcgtcctccattaatct 16794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 7169067 - 7168841
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| | ||||| | |||||| |||||||||  ||    
T  7169067 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcatcttgtcgtcctcctttaatctactagc 7168968  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| |||| || ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| |    
T  7168967 aagaatgtatccttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccactcctttgtttgcctactttgatatccacta 7168868  T
Q  216 accatgaacatacacctacatattctt 242  Q
    ||||||||||  |||| |||| |||||    
T  7168867 accatgaacaagcacccacattttctt 7168841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 35965639 - 35965848
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  35965639 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 35965738  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  35965739 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 35965838  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  35965839 atcatgaaca 35965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 14401676 - 14401894
Alignment:
Q  26 cttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcaca--tacaagcttcttgccatcctccgttaatctacccgcaagcatgt 123  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||||||||| |  ||||| ||||||| |||| ||| ||||||| || ||||| ||||    
T  14401676 cttcaaattcatcaaaatattttttggtggcaccaaactcttggtcaagtcatatgtacaatcttcttgtcatcatcccttaatcttcctgcaagaatgt 14401775  T
Q  124 gtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    | | |||||||||| |   ||  || ||||||||||||||||||||||||   ||  || |||| ||||||| |||||||| |||| || | | | ||||    
T  14401776 gccattctaaacttggcaccaattcatggttgtgaactccattaagaatagccaacttccaatcctttgtttccctactaacatatccatgcaacttgaa 14401875  T
Q  224 catacacctacatattctt 242  Q
    || ||||| |||| |||||    
T  14401876 cacacacccacattttctt 14401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 39751922 - 39752148
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  39751922 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggc 39752021  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    |   || |||| |||||||    ||| |||  | ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| |    
T  39752022 ataaatatgtcattctaaagccggttccattgcatggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccacca 39752121  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | |||||||| ||| | |||| |||||    
T  39752122 atcatgaacaaacatccacattttctt 39752148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 45455496 - 45455317
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| ||||||| |  | | |||| | ||||||| |||||    
T  45455496 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtcggctccatcgcatggttgttaactc 45455397  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    |||||||||| |  |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  45455396 cattaagaatgtccaatccccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 45455317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 22581048 - 22580914
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||||| ||||||| ||||||| |     
T  22581048 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtc 22580949  T
Q  138 cgttacatctcttggttgtgaactccattaagaat 172  Q
     | | |||| | ||||||| |||||||||||||||    
T  22580948 ggctccatcgcatggttgtaaactccattaagaat 22580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 43689065 - 43689291
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| |  |||||| |   |||||||||||||||| ||||| ||||||| | |||||  |||||||||| ||    
T  43689065 gtcttttgttcttcaaatgtatcaaaatatttcttcgaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcttttaatctaccggc 43689164  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  43689165 aagaatgtgtccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttaaatccccattcctttgtttgcttactttgatatccacta 43689264  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  43689265 atcatgaacaagcacccacattttctt 43689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 43370934 - 43370725
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||| |||||| ||    
T  43370934 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 43370835  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||      | |||| | ||||||||||||||||||||||| || || | | | || ||||||||| ||||  ||||| ||| |    
T  43370834 aagaatgtgtccttctaaagccgactccatcgcatggttgtgaactccattaagaatgttcaaaccccattcctttgtttgcttactttgatatccacta 43370735  T
Q  216 accatgaaca 225  Q
    | ||||||||    
T  43370734 atcatgaaca 43370725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 2145948 - 2146070
Alignment:
Q  80 tacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 179  Q
    ||||| ||||||| | |||||| |||||||||| ||||| || |||| ||||||| |  | | |||| | ||||||||||||||||||| ||| || |||    
T  2145948 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatatgtccttctaaagtcggctccatcgcatggttgtgaactccattaaaaatgttcaat 2146047  T
Q  180 ctcgaatcatttgtttgcctact 202  Q
    ||| | |||||||||||| ||||    
T  2146048 ctccattcatttgtttgcttact 2146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 7341224 - 7341039
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  7341224 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 7341125  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7341124 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 8422772 - 8422957
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  8422772 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagcc 8422871  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    | ||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8422872 ggctccatgggatagttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 30304526 - 30304711
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  30304526 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 30304625  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30304626 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 32377824 - 32378009
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  32377824 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 32377923  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32377924 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 32431781 - 32431966
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  32431781 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 32431880  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32431881 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 1115917 - 1115821
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaa 134  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||    
T  1115917 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtactatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 1115821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 17236 - 17010
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||| |||||| ||    
T  17236 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacttacaatcttcttgtcgtcctcctttagtctaccggc 17137  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  17136 aagaatgtgtccttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccctattcctttgtttgcttactttgatatccacta 17037  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  17036 atcatgaacaagcacccacattttctt 17010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 18607163 - 18606937
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| | |||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||| |  |    
T  18607163 gtcttttgttattcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcgac 18607064  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  18607063 aagaatgtgtccttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 18606964  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  18606963 atcatgaacaagcacccacattttctt 18606937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 24220335 - 24220107
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaa--ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctaccc 113  Q
    |||||||| | |||||||| | |||||||||| | ||||||| |  |  |||||||||||||||| || ||  |||||| | |||||| ||||||||||     
T  24220335 gtcttttgtttttcaaatttatcaaaatatttcttggaagcatcttatgctcttggtcaagtcacgtataattttcttgtcgtcctcctttaatctaccg 24220236  T
Q  114 gcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 213  Q
     |||| ||||||| |||||||      | |||| | |||||||||||| |||||||||| || |||| | | |||||||||| ||||||||||||| |||    
T  24220235 acaagaatgtgtccttctaaagccgactccatcgcatggttgtgaactgcattaagaattttcaatccccattcatttgttttcctactaagatatccac 24220136  T
Q  214 gaaccatgaacatacacctacatattctt 242  Q
     ||||||| |||  |||| |||| |||||    
T  24220135 taaccatggacaagcacccacattttctt 24220107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 31147442 - 31147333
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||| ||||||||| ||||| ||||||| ||| |||| |||||||||| ||||| ||||||| ||||||| |  | | |||| | |||||||||||||    
T  31147442 ctcttgatcaagtcacgtacaatcttcttgtcattctcctttaatctaccggcaagaatgtgtccttctaaagtcggctccatcgcatggttgtgaactc 31147343  T
Q  163 cattaagaat 172  Q
    ||||||||||    
T  31147342 cattaagaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 28251063 - 28250856
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||| | ||    
T  28251063 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcggc 28250964  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  28250963 aagaatgtgtccttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 28250864  T
Q  216 accatgaa 223  Q
    | ||||||    
T  28250863 atcatgaa 28250856  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 7362299 - 7362137
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | |||||| ||| |||||| ||||| ||||||| ||||||| |    | |||| | |||||||||||||    
T  7362299 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcattctaaagtcgactccatcgcatggttgtgaactc 7362200  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 225  Q
    |||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7362199 cattaagaatgttcaatccacattcctttgtttgcttactttgatatccactaatcatgaaca 7362137  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 29287842 - 29288028
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| ||| |||||| ||    
T  29287842 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggc 29287941  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 202  Q
    ||| ||||||| || ||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  29287942 aagaatgtgtccttataaagccgactccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 29288028  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 21358241 - 21358359
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||  ||||| ||||||| | |||||| |||||||| | ||    
T  21358241 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggc 21358340  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  21358341 aagaatgtgtccttctaaa 21358359  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 23962223 - 23962341
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||  ||||| ||||||| | |||||| |||||||| | ||    
T  23962223 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggc 23962322  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  23962323 aagaatgtgtccttctaaa 23962341  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 1611667 - 1611852
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  1611667 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1611766  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1611767 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1611852  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 34111598 - 34111713
Alignment:
Q  58 ccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtg 157  Q
    ||||||||||||||||||||| ||||| ||||| | |||| ||| ||||||| || ||||| || |  | ||||||  || |   |||||| ||||||||    
T  34111598 ccaaactcttggtcaagtcacgtacaatcttctagtcatcttcctttaatcttcctgcaagaattttcccttctaactttggcgccatctcatggttgtg 34111697  T
Q  158 aactccattaagaata 173  Q
    ||||||||||||||||    
T  34111698 aactccattaagaata 34111713  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 35243636 - 35243544
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  35243636 tggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 35243544  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 13387722 - 13387795
Alignment:
Q  150 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| |||||| ||||||    
T  13387722 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacgaatcatgaa 13387795  T

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Target: scaffold0116 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 12429 - 12203
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||||| |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| |     
T  12429 gtcttttgttcttcaaatgtatcaaaatatttcttggaagcatctttctcttggtcaagtcacgtacaatcttcttgtcgtcctccattaatctaccgga 12330  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||  | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  12329 aagaatgtgtccttctaaagccagctccatggcatggttttgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 12230  T
Q  216 accatgaacatacacctacatattctt 242  Q
    | ||||||||  |||| |||| |||||    
T  12229 atcatgaacaagcacccacattttctt 12203  T

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Target: scaffold0341 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 16251 - 16369
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| ||    
T  16251 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcttcctcctttaatctaccggc 16350  T
Q  116 aagcatgtgtctttctaaa 134  Q
    ||| ||||||| |||||||    
T  16351 aagaatgtgtccttctaaa 16369  T

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Target: scaffold0494 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 2048 - 1841
Alignment:
Q  16 gtcttttggtcttcaaattcaacaaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgc 115  Q
    |||||| | |||||||||  | |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||    
T  2048 gtctttggttcttcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggc 1949  T
Q  116 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 215  Q
    ||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| |    
T  1948 aagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacta 1849  T
Q  216 accatgaa 223  Q
    | ||||||    
T  1848 atcatgaa 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 111 - 290
Alignment:
Q  63 ctcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 162  Q
    |||||||||||||||| ||||| ||||||| | | |||| ||| ||||| || ||| ||||||| |||||||    | | |||| | |||||||||||||    
T  111 ctcttggtcaagtcacgtacaatcttcttgtcgttctcctttagtctactcgtaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 210  T
Q  163 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacatattctt 242  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||  |||| |||| |||||    
T  211 cattaagaatgttcaatcaccattcctttgtttgcttactttgatatccactaatcatgaacaagcacccacattttctt 290  T

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Target: scaffold0101 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 33954 - 33769
Alignment:
Q  38 caaaatatttttgggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctccgttaatctacccgcaagcatgtgtctttctaaactt 137  Q
    |||||||||| | ||||||| |   |||||||||||||||| ||| | ||||||| | |||||| |||||||||| ||||| ||||||| |||||||       
T  33954 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 33855  T
Q  138 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 223  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  33854 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 33769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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