View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_139 (Length: 250)

Name: NF9612A_low_139
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_139
NF9612A_low_139
[»] chr1 (10 HSPs)
chr1 (1-250)||(45968501-45968752)
chr1 (118-234)||(5558262-5558378)
chr1 (137-214)||(44107468-44107545)
chr1 (181-234)||(30745359-30745413)
chr1 (181-234)||(30766810-30766864)
chr1 (183-234)||(3346804-3346855)
chr1 (183-234)||(10156075-10156126)
chr1 (181-214)||(37189318-37189351)
chr1 (164-212)||(1106774-1106822)
chr1 (178-226)||(26511700-26511748)
[»] chr6 (4 HSPs)
chr6 (157-250)||(27863691-27863784)
chr6 (150-226)||(34103671-34103746)
chr6 (179-226)||(11279554-11279601)
chr6 (164-234)||(11212670-11212740)
[»] chr3 (15 HSPs)
chr3 (165-234)||(54546904-54546973)
chr3 (149-234)||(48206837-48206923)
chr3 (150-239)||(51336194-51336283)
chr3 (164-250)||(19649415-19649503)
chr3 (131-234)||(33103709-33103812)
chr3 (181-214)||(47315184-47315217)
chr3 (150-234)||(5391443-5391526)
chr3 (183-234)||(13856117-13856168)
chr3 (164-250)||(36539630-36539717)
chr3 (181-234)||(10839439-10839493)
chr3 (181-234)||(43347395-43347449)
chr3 (150-234)||(1781746-1781831)
chr3 (183-240)||(44995022-44995079)
chr3 (185-234)||(46685842-46685891)
chr3 (164-227)||(8926764-8926828)
[»] chr5 (9 HSPs)
chr5 (150-238)||(36769129-36769217)
chr5 (181-234)||(11856310-11856364)
chr5 (161-234)||(6174740-6174813)
chr5 (151-234)||(42119607-42119691)
chr5 (183-234)||(15631631-15631682)
chr5 (164-234)||(25560386-25560457)
chr5 (181-234)||(9738042-9738096)
chr5 (132-234)||(33271329-33271431)
chr5 (186-234)||(39862546-39862594)
[»] chr8 (5 HSPs)
chr8 (181-250)||(10112062-10112132)
chr8 (181-234)||(42072444-42072497)
chr8 (183-234)||(21525376-21525427)
chr8 (152-234)||(35806782-35806863)
chr8 (181-234)||(24065289-24065342)
[»] chr7 (7 HSPs)
chr7 (118-234)||(26284437-26284555)
chr7 (164-250)||(33057700-33057786)
chr7 (188-238)||(9770682-9770732)
chr7 (131-250)||(10334143-10334263)
chr7 (183-234)||(29555998-29556049)
chr7 (183-234)||(29981172-29981223)
chr7 (183-234)||(32876589-32876640)
[»] chr4 (5 HSPs)
chr4 (164-234)||(46473992-46474063)
chr4 (118-234)||(50328748-50328865)
chr4 (183-234)||(49284375-49284426)
chr4 (181-234)||(322608-322662)
chr4 (181-234)||(20818582-20818636)
[»] chr2 (4 HSPs)
chr2 (131-226)||(1387355-1387450)
chr2 (140-234)||(3597926-3598019)
chr2 (152-250)||(41674749-41674849)
chr2 (183-234)||(29846460-29846511)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 45968501 - 45968752
Alignment:
Q  1 gtcgagtttggtgttatgtttgtgggtggaccaatattttgtccttctcaaggtacttata--taagtggtgaaatcaataaagtaaaggcatgcaaaat 98  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  45968501 gtcgactttgctgttatgtttgtgggtggaccaatattttgtccttctcaaggtacttatatataagtggtgaaatcaataaagtaaaggtatgcaaaat 45968600  T
Q  99 gaaaaactccctccggtctagtggtggaacctggatttttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  45968601 gaaaaactccctccggtctagtggtggaacctggatttttataaagttcaagcaaaataaattcacaatacatttaagaggatttacataagaaattgca 45968700  T
Q  199 aataaataatcaaaaatctatagaaattgtccaattcataagcgattatata 250  Q
    | |||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  45968701 agtaaataatcaaaaatctataaaaattgtccaatttataagagattatata 45968752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 5558262 - 5558378
Alignment:
Q  118 agtggtggaacctggatttttataaagttcaagcaaaataaatttacaacacatttaagagga-tttacataagaaattgcaaataaataatcaaaaatc 216  Q
    |||||||||||| ||||| |||||||||    |||||| ||| |||||||| |||||  |||| |||| ||| ||||||||||  |||||||||||||||    
T  5558262 agtggtggaaccaggattattataaagtctgggcaaaaaaaaattacaacatatttat-aggagtttatatatgaaattgcaagcaaataatcaaaaatc 5558360  T
Q  217 tatagaaattgtccaatt 234  Q
    || |||||||||||||||    
T  5558361 taaagaaattgtccaatt 5558378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 44107545 - 44107468
Alignment:
Q  137 ttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaa 214  Q
    ||||||||| |  ||||||  ||||| |||||||||||  ||| ||||||||||||||||||| ||||||||||||||    
T  44107545 ttataaagtccgggcaaaaataatttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaa 44107468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 30745359 - 30745413
Alignment:
Q  181 tttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||||||||||||    
T  30745359 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatt 30745413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 30766810 - 30766864
Alignment:
Q  181 tttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||||||||||||    
T  30766810 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatt 30766864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 3346804 - 3346855
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  3346804 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 3346855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 10156126 - 10156075
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  10156126 tacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatt 10156075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 37189318 - 37189351
Alignment:
Q  181 tttacataagaaattgcaaataaataatcaaaaa 214  Q
    |||||||||||||||||||| |||||||||||||    
T  37189318 tttacataagaaattgcaaacaaataatcaaaaa 37189351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 1106774 - 1106822
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataatcaaa 212  Q
    |||||||||||  || ||||||||||||||||||||  |||||||||||    
T  1106774 caacacatttataagaatttacataagaaattgcaagcaaataatcaaa 1106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 26511748 - 26511700
Alignment:
Q  178 ggatttacataagaaattgcaaataaataatcaaaaatctatagaaatt 226  Q
    |||||||| |||||||||| || ||||||||||||||| || |||||||    
T  26511748 ggatttacgtaagaaattgtaagtaaataatcaaaaatttaaagaaatt 26511700  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 27863691 - 27863784
Alignment:
Q  157 aaatttacaacacattta-agaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaattcataagcgattatata 250  Q
    |||||| ||||||||||| ||| | |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| ||||| | |||||||    
T  27863691 aaatttgcaacacatttatagatg-tttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatata 27863784  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 34103671 - 34103746
Alignment:
Q  150 gcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaatt 226  Q
    ||||||||||||  |||||||||||  | | |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  34103671 gcaaaataaattg-caacacatttacaaaggtttacataagaaattgcaaacaaataataaaaaatctaaagaaatt 34103746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 11279554 - 11279601
Alignment:
Q  179 gatttacataagaaattgcaaataaataatcaaaaatctatagaaatt 226  Q
    |||||||||||||||||||||  ||||||| ||||||||| |||||||    
T  11279554 gatttacataagaaattgcaagcaaataataaaaaatctaaagaaatt 11279601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 11212670 - 11212740
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||   | |||||||||||||||| |||  ||||||| ||||||||| |||||||| ||||||    
T  11212670 caacacatttataggaatttacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatt 11212740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 54546904 - 54546973
Alignment:
Q  165 aacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    ||||||||||   ||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatt 54546973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 48206837 - 48206923
Alignment:
Q  149 agcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    ||||||| |||||| |||||||||||  ||  ||||||||||||||||||| ||||||||| ||||||||| | |||||||| ||||    
T  48206837 agcaaaagaaatttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatt 48206923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 51336194 - 51336283
Alignment:
Q  150 gcaaaataaatttacaacacattta-agaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaattcataa 239  Q
    |||||| |||||||||||||||||| ||| | ||||| ||||||||||||| |||||||| |||||| || |||||||||| |||| ||||    
T  51336194 gcaaaaaaaatttacaacacatttatagaag-tttacgtaagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataa 51336283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 19649503 - 19649415
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataatc--aaaaatctatagaaattgtccaattcataagcgattatata 250  Q
    |||||||||||   ||| ||||||||||||||||||  ||||||||  ||||||||| ||||||||||||||| ||||| | |||||||    
T  19649503 caacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatata 19649415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 33103709 - 33103812
Alignment:
Q  131 ggatttttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtcc 230  Q
    ||||| ||||||||||   | |||| |||||| |||||||||||  ||||||||||||||||||| |||  ||||||| |||||| || | ||||| |||    
T  33103709 ggattattataaagtttgggtaaaaaaaatttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatcc 33103808  T
Q  231 aatt 234  Q
    ||||    
T  33103809 aatt 33103812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 47315217 - 47315184
Alignment:
Q  181 tttacataagaaattgcaaataaataatcaaaaa 214  Q
    ||||||||||||||||||||||||||||||||||    
T  47315217 tttacataagaaattgcaaataaataatcaaaaa 47315184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 5391443 - 5391526
Alignment:
Q  150 gcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||| |||||| |||||||||||  |||   |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  5391443 gcaaaaaaaatttgcaacacatttat-agggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 5391526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 13856117 - 13856168
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  13856117 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 13856168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 36539630 - 36539717
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaattcataagcgattatata 250  Q
    |||||||||||   || |||||||| ||||||||||| |||||||| |||||| || |||||||| |||||| ||| | |||||||||    
T  36539630 caacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatata 36539717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 10839493 - 10839439
Alignment:
Q  181 tttacataagaaattgcaaataaataatca-aaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||  ||||||||| |||||||| |||||||| ||||||    
T  10839493 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatt 10839439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 43347449 - 43347395
Alignment:
Q  181 tttacataagaaattgcaaataaataatca-aaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||  ||||||||| |||||||| |||||||| ||||||    
T  43347449 tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatt 43347395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 1781746 - 1781831
Alignment:
Q  150 gcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    |||||| ||| || |||||||||||   || |||||||| ||||||||||  |||||||| ||||||||| |||||||| ||||||    
T  1781746 gcaaaaaaaaattgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatt 1781831  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 44995079 - 44995022
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaattcataag 240  Q
    |||||||||||||||||  ||||||| |||||| || |||||||| |||||| |||||    
T  44995079 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataag 44995022  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 46685891 - 46685842
Alignment:
Q  185 cataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||| ||||||| |||||| || |||||||||| ||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatt 46685842  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 8926764 - 8926828
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataatc-aaaaatctatagaaattg 227  Q
    |||||||||||  ||| || ||||||||||||||||  |||||||| ||||||||| ||||||||    
T  8926764 caacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattg 8926828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 36769217 - 36769129
Alignment:
Q  150 gcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaattcata 238  Q
    |||||| |||||| |||||||||||   || |||||||| ||||||||||  ||||||||||||||||| |||||||| | ||||||||    
T  36769217 gcaaaaaaaatttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcata 36769129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 11856310 - 11856364
Alignment:
Q  181 tttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||    
T  11856310 tttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatt 11856364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 6174740 - 6174813
Alignment:
Q  161 ttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||| ||||| | || |||||||| ||||||||||  ||||||| |||||| || |||||||||||||||    
T  6174740 ttacaacatatttatgggggtttacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatt 6174813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 42119607 - 42119691
Alignment:
Q  151 caaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataat-caaaaatctatagaaattgtccaatt 234  Q
    ||||| ||| || |||||||||||   || ||||||||||||||| |||| |||||||  ||||||||| |||||||||||||||    
T  42119607 caaaagaaaattgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatt 42119691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 15631631 - 15631682
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  15631631 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 15631682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 25560457 - 25560386
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataatcaaa-aatctatagaaattgtccaatt 234  Q
    |||||||||||   || |||||||||||||||||||  ||||||| ||| |||||| |||||||||||||||    
T  25560457 caacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatt 25560386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 9738096 - 9738042
Alignment:
Q  181 tttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||  |||||| | ||||||||| |||||||||||||||    
T  9738096 tttacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatt 9738042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 33271431 - 33271329
Alignment:
Q  132 gatttttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtcca 231  Q
    |||| |||||||||  | |||||| |||||| ||| | |||||   || |||| |||||||||| |||| ||||||| |||||| || ||||||||||||    
T  33271431 gattattataaagtctaggcaaaacaaatttgcaatatatttataggggtttatataagaaattacaaacaaataataaaaaatataaagaaattgtcca 33271332  T
Q  232 att 234  Q
    |||    
T  33271331 att 33271329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 39862594 - 39862546
Alignment:
Q  186 ataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    ||||||||||||||  ||||||| ||||||||| |||||||| ||||||    
T  39862594 ataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatt 39862546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 10112062 - 10112132
Alignment:
Q  181 tttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaattcataagcgattatata 250  Q
    ||||||||||||||||||||||||||||| ||||||  | ||||||||||||||| ||||| | |||||||    
T  10112062 tttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatata 10112132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 42072444 - 42072497
Alignment:
Q  181 tttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  42072444 tttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 42072497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 21525376 - 21525427
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  21525376 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 21525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 35806782 - 35806863
Alignment:
Q  152 aaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||| |||||| |||||||||||  ||| | |||||||||||||||||  ||||||| |||||| || |||||||| ||||||    
T  35806782 aaaaaaaatttgcaacacatttat-agggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatt 35806863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 24065289 - 24065342
Alignment:
Q  181 tttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||  ||||||| ||||| ||| |||||||| ||||||    
T  24065289 tttacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatt 24065342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 26284555 - 26284437
Alignment:
Q  118 agtggtggaacctggatttttataaagttcaagcaaaataaat--ttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaat 215  Q
    ||||||||| || ||||| ||||||||||   |||||| |||   || |||||||||||   || |||||| ||||||||||||  ||||||| ||||||    
T  26284555 agtggtggagccaggattgttataaagtttgggcaaaaaaaaaaattgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaat 26284456  T
Q  216 ctatagaaattgtccaatt 234  Q
    ||| |||||||||||||||    
T  26284455 ctaaagaaattgtccaatt 26284437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 33057786 - 33057700
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataat-caaaaatctatagaaattgtccaattcataagcgattatata 250  Q
    |||||||||||  |||||||||||||||||||||||  |||||||  ||||||||| ||||||||| ||||| ||| | |||||||||    
T  33057786 caacacatttat-aggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatata 33057700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 9770682 - 9770732
Alignment:
Q  188 aagaaattgcaaataaataatcaaaaatctatagaaattgtccaattcata 238  Q
    ||||||||||||  |||||||||||| |||| |||||||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcata 9770732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 10334143 - 10334263
Alignment:
Q  131 ggatttttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaa-atctatagaaattgtc 229  Q
    ||||| |||||||||   ||||||| ||| || |||||||||||   || |||||||||||||||||||  ||||| | |||| ||||| |||||||| |    
T  10334143 ggattattataaagtctgagcaaaagaaaattgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcc 10334242  T
Q  230 caattcataagcgattatata 250  Q
    ||||| ||||| | |||||||    
T  10334243 caatttataagagtttatata 10334263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 29556049 - 29555998
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  29556049 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 29555998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 29981223 - 29981172
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  29981223 tacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatt 29981172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 32876640 - 32876589
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  32876640 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 32876589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 46473992 - 46474063
Alignment:
Q  164 caacacatttaagaggatttacataagaaattgcaaataaataat-caaaaatctatagaaattgtccaatt 234  Q
    |||||||||||  ||||||||||||||||||| |||  ||||||| |||||||||| ||||||||| |||||    
T  46473992 caacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatt 46474063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 50328748 - 50328865
Alignment:
Q  118 agtggtggaacctggatttttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataat-caaaaatc 216  Q
    ||||| ||||||  |||| ||||||||||   |||||| | |||| |||||||||||  ||| ||||||||| ||||||||| | ||||||  ||||||     
T  50328748 agtggcggaaccaagattattataaagtttgggcaaaaaatatttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatt 50328847  T
Q  217 tatagaaattgtccaatt 234  Q
    || |||||||||||||||    
T  50328848 taaagaaattgtccaatt 50328865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 49284375 - 49284426
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||| ||||||| |||||| || |||||||| ||||||    
T  49284375 tacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatt 49284426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 322662 - 322608
Alignment:
Q  181 tttacataagaaattgcaaataaataatca-aaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||  ||||||||| ||||| || |||||||||||||||    
T  322662 tttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatt 322608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 20818582 - 20818636
Alignment:
Q  181 tttacataagaaattgcaaataaataatc-aaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||||| |||||||| ||||||||| | |||||| ||||||    
T  20818582 tttacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatt 20818636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 1387450 - 1387355
Alignment:
Q  131 ggatttttataaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaatt 226  Q
    ||||| || ||||||||  | |||| |||||| ||||||||||   ||| |||||||||||||||||||  ||||||| ||||||||| |||||||    
T  1387450 ggattattgtaaagttcgggtaaaaaaaatttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaatt 1387355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 3598019 - 3597926
Alignment:
Q  140 taaagttcaagcaaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||| ||||||| |||||| ||| |||||||  |||   ||| ||||||||||||| |||||||| |||||| || |||||||||||||||    
T  3598019 taaagttcgagcaaaaaaaatttgcaatacatttat-agggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatt 3597926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 41674849 - 41674749
Alignment:
Q  152 aaaataaatttacaacacatttaagaggatttacataagaaattgcaaataaataatcaaaaa--tctatagaaattgtccaattcataagcgattatat 249  Q
    |||| |||||| |||||||||||   ||||||| ||||||||||||||  ||||| | |||||  |||| ||||||||||||||| ||||| | ||||||    
T  41674849 aaaaaaaatttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatat 41674750  T
Q  250 a 250  Q
    |    
T  41674749 a 41674749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 29846460 - 29846511
Alignment:
Q  183 tacataagaaattgcaaataaataatcaaaaatctatagaaattgtccaatt 234  Q
    |||||||||||||||||  ||||||| |||||| || |||||||||||||||    
T  29846460 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatt 29846511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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