View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_149 (Length: 249)
Name: NF9612A_low_149
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_149 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 17109152 - 17109380
Alignment:
| Q |
21 |
atcagtgatttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggat |
120 |
Q |
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| T |
17109152 |
atcagtgaattacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcttgggaggat |
17109251 |
T |
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| Q |
121 |
cctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctgg |
220 |
Q |
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| T |
17109252 |
cctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctgg |
17109351 |
T |
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| Q |
221 |
tcactacaatttccttgtaaaattggtca |
249 |
Q |
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| T |
17109352 |
tcactacaatttccttgtaaaattggtca |
17109380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 16977820 - 16978045
Alignment:
| Q |
21 |
atcagtgatttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggat |
120 |
Q |
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| T |
16977820 |
atcagtgaactacgtctcaccaattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgttacatcgaaggat |
16977919 |
T |
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| Q |
121 |
cctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctgg |
220 |
Q |
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| T |
16977920 |
cctccgtggattggaccgggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcccaactatgcatattcccctatgcgg |
16978019 |
T |
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| Q |
221 |
tcactacaatttccttgtaaaattgg |
246 |
Q |
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| T |
16978020 |
atgctacagtttccttgtaaaattgg |
16978045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 17029692 - 17029917
Alignment:
| Q |
21 |
atcagtgatttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggat |
120 |
Q |
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| T |
17029692 |
atcagtgaactacgtctcaccaattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgctacatcgaaggat |
17029791 |
T |
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| Q |
121 |
cctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctgg |
220 |
Q |
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| T |
17029792 |
cctccgtggattggatcaggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcgg |
17029891 |
T |
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| Q |
221 |
tcactacaatttccttgtaaaattgg |
246 |
Q |
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| T |
17029892 |
atgctacaatttccttgtaaaattgg |
17029917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 17048030 - 17048255
Alignment:
| Q |
21 |
atcagtgatttacgtctaatcaattgcggagaattggaatttaattattgttcaccctctctgaagtttcttgagatccgtggatgttgcgtgggaggat |
120 |
Q |
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| T |
17048030 |
atcagtgaactacgtctcaccaattgtggaaaattgaaatttaattatcatttatccactctgaaatttctttacattcgtcaatgctacatcgaaggat |
17048129 |
T |
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| Q |
121 |
cctccgtgcatttgatcgggagtgccttatctgaatgtggtaccaacattaaagtgttgaaaattgaagactgtccaactgtgcaaattccactagctgg |
220 |
Q |
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| T |
17048130 |
cctccgtggattggatcaggcatacattatctgaatgtggtaccaacattaaatcgttgaaaattgaagattgcgcaactatgcatattcccctatgcgg |
17048229 |
T |
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| Q |
221 |
tcactacaatttccttgtaaaattgg |
246 |
Q |
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| T |
17048230 |
atgctacaatttccttgtaaaattgg |
17048255 |
T |
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