View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_150 (Length: 249)
Name: NF9612A_low_150
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_150 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24001348 - 24001113
Alignment:
| Q |
1 |
gatttctgctatgagttcgtctgggaggaacaaagtctgcttgcataggtcatgaagtcgtagctttttatttgcaggggtatccatcatcaaagtatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24001348 |
gatttctgctatgagttcgtctgggaggaacaaagtctgcttgcataggtcatgaagtcgtagctttttatttgcaggggtatccatcatcaaagtatag |
24001249 |
T |
|
| Q |
101 |
tgaagttgaagaaattgaaaaaccctaaaaca--------tatcaacgcaaatccattctgcaaatgcggcaagagagttgaaaaaaccctaacacgtac |
192 |
Q |
| |
|
||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24001248 |
tgaggttgaagaaattgaaaaaccctaacacatgcaactctatcaacgcaaatccattctgcaaatgcggcaagagagttgaacaaaccctaacacgtac |
24001149 |
T |
|
| Q |
193 |
caccaaactcagttgtgcaatgctatatataactat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24001148 |
caccaaactcagttgtgcaatgctatatataactat |
24001113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24009532 - 24009303
Alignment:
| Q |
1 |
gatttctgctatgagttcgtctgggaggaacaaagtctgcttgcataggtcatgaagtcgtagctttttatttgcaggggtatccatcatcaaagtatag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||||| |||| || |||| |
|
|
| T |
24009532 |
gatttctgctatgagttcatctgggaggaacaaagtctgcttggataggtcatgaagtcgtatctttttattcggaggggtatccataatcatagaatag |
24009433 |
T |
|
| Q |
101 |
tgaagttgaagaa-attgaaaaaccctaaaaca--------tatcaacgcaaatccattctgcaaatgcggcaagagagttgaaaaaaccctaacacgta |
191 |
Q |
| |
|
| ||||||||||| || ||||||||||| ||| |||||| ||| ||| |||||||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
24009432 |
ttaagttgaagaagatgaaaaaaccctaacacatgcaactctatcaaagcagatcaattctgcaaatgcggcgagagagttaacaaaaccctaagacgt- |
24009334 |
T |
|
| Q |
192 |
ccaccaaactcagttgtgcaatgctatatataa |
224 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |
|
|
| T |
24009333 |
--accaaactcaattgtgcattgctatatataa |
24009303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 29917432 - 29917386
Alignment:
| Q |
194 |
accaaactcagttgtgcaatgctatatataactattgtacatgggcc |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
29917432 |
accaaactaagttgtgcaatgctatatataactattataaatgggcc |
29917386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University