View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_152 (Length: 248)
Name: NF9612A_low_152
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_152 |
 | |
|
| [»] scaffold0110 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0110 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 13275 - 13506
Alignment:
| Q |
1 |
atgctgctgctggtcaaagatatagagagaaataccaggtaaatttagtattttgattcatttgtagattaagtgt--gtttagattatccgtgagtttg |
98 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
13275 |
atgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagattatccatgagtttg |
13374 |
T |
|
| Q |
99 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaagg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13375 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaagg |
13474 |
T |
|
| Q |
199 |
tgcaactgtgatttcgtcaaactcgatttgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13475 |
tgcaactgtgatttcgtcaaactcgatttgat |
13506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21012 - 21243
Alignment:
| Q |
1 |
atgctgctgctggtcaaagatatagagagaaataccaggtaaatttagtattttgattcatttgtagattaagtgt--gtttagattatccgtgagtttg |
98 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
21012 |
atgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagattatccatgagtttg |
21111 |
T |
|
| Q |
99 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaagg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21112 |
ctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaagg |
21211 |
T |
|
| Q |
199 |
tgcaactgtgatttcgtcaaactcgatttgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21212 |
tgcaactgtgatttcgtcaaactcgatttgat |
21243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 30132 - 30254
Alignment:
| Q |
1 |
atgctgctgctggtcaaagatatagagagaaataccaggtaaatttagtattttgattcatttgtagattaag--tgtgtttagattatccgtgagtttg |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||| ||||| | ||||||||| |
|
|
| T |
30132 |
atgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttttagattaagtatgtgtttggattagcagtgagtttg |
30231 |
T |
|
| Q |
99 |
ctagaatcacgatgtgtcatagt |
121 |
Q |
| |
|
||| ||| |||||| |||||| |
|
|
| T |
30232 |
tcagagtcatgatgtgccatagt |
30254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 30224 - 30332
Alignment:
| Q |
122 |
tgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact |
221 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||||| | ||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
30224 |
tgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaact |
30323 |
T |
|
| Q |
222 |
cgatttgat |
230 |
Q |
| |
|
||| |||| |
|
|
| T |
30324 |
tgatgtgat |
30332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University