View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_155 (Length: 247)
Name: NF9612A_low_155
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_155 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 49165884 - 49166116
Alignment:
| Q |
1 |
tttgcgcggcgtgtacgaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaat |
100 |
Q |
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| T |
49165884 |
tttgcgcagcgtgtacgaaattcattctcgagcaagtacttgggtcccaaaaagaagactgcaatgttacagtttgaggaaaaattgtggcctgtacaat |
49165983 |
T |
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| Q |
101 |
tgatgtattatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgt |
200 |
Q |
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| T |
49165984 |
tgatgtattatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgt |
49166083 |
T |
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| Q |
201 |
gcttgccaacaaggaagatgttgtgcttgatgt |
233 |
Q |
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| T |
49166084 |
gcttgccaacaaggaagatgttgtgcttgatgt |
49166116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 43752422 - 43752543
Alignment:
| Q |
111 |
tccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaagaaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaac |
210 |
Q |
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| T |
43752422 |
tccatccgaaccgtcaaccaagttgagtacaggttggagtaagtttgtagaggaaaataaattggaggctggagatgtatgtgtttttgagctcgtcaat |
43752521 |
T |
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| Q |
211 |
aaggaagatgttgtgcttgatg |
232 |
Q |
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| T |
43752522 |
aaggaagatcttgtgtttgatg |
43752543 |
T |
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