View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_157 (Length: 246)
Name: NF9612A_low_157
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_157 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 29177488 - 29177727
Alignment:
| Q |
2 |
gaagcagagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactac |
101 |
Q |
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| T |
29177488 |
gaagcaaagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactac |
29177587 |
T |
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| Q |
102 |
ctgcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcatgagcaattgt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29177588 |
ctgcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcctgagcaattgt |
29177687 |
T |
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| Q |
202 |
tgttgaccttgttttggcatgccatactgaccttatttgt |
241 |
Q |
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| T |
29177688 |
tgttgaccttgttttggcatgccatactgaccttatttgt |
29177727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 2055693 - 2055533
Alignment:
| Q |
2 |
gaagcagagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactac |
101 |
Q |
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|||||| ||| || || |||||||| ||||| |||| || ||||| || ||||| ||||| || ||||||||||| || || ||||| ||||| || || |
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| T |
2055693 |
gaagcaaagacactgtctttgaaggaacagaatacagattgtcactttcatttcccaatgagtatccttttaaggccccaaaggtcaaatttgacaccac |
2055594 |
T |
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| Q |
102 |
ctgcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatg |
162 |
Q |
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|||||||| |||||||||||| | |||||||| || ||||||||||| |||||||||||| |
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| T |
2055593 |
atgcttccaccccaatgttgatttgcatggcaatatttgcttggacattcttcaggtaatg |
2055533 |
T |
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