View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_158 (Length: 246)
Name: NF9612A_low_158
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_158 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 40063292 - 40063070
Alignment:
| Q |
24 |
ggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagt |
123 |
Q |
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| T |
40063292 |
ggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagt |
40063193 |
T |
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| Q |
124 |
atcgcccaatgctttgtccatttacccaagcctcgccttttcccctccccgtgaagtcaatcgaaactggattactgccggatggagcatcaaagtttgt |
223 |
Q |
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| T |
40063192 |
atcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgt |
40063093 |
T |
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| Q |
224 |
ctaatgcaccatgcatgacattg |
246 |
Q |
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|||||||| |||| ||||||||| |
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| T |
40063092 |
ctaatgcaacatgtatgacattg |
40063070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 40093923 - 40093701
Alignment:
| Q |
24 |
ggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40093923 |
ggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcgacatttgaagcaacatatgtaggccagt |
40093824 |
T |
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| Q |
124 |
atcgcccaatgctttgtccatttacccaagcctcgccttttcccctccccgtgaagtcaatcgaaactggattactgccggatggagcatcaaagtttgt |
223 |
Q |
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| T |
40093823 |
atcgcccaatgctttgtccatttacccaagcctcgccttttcccatccctgtgaagtcaatcacaactggattactgccggatggagcatcaaagtttgt |
40093724 |
T |
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| Q |
224 |
ctaatgcaccatgcatgacattg |
246 |
Q |
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| T |
40093723 |
ctaatgcaacatgcatgacattg |
40093701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 40081643 - 40081421
Alignment:
| Q |
24 |
ggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagt |
123 |
Q |
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||||||||||| ||| || ||||||| | | |||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
40081643 |
ggttttccacagttcttgcgacatttagatgaagtataaggtcctctatagttgcatgagtctgtgcaaccggcatttgaagcgacatatgtaggccagt |
40081544 |
T |
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| Q |
124 |
atcgcccaatgctttgtccatttacccaagcctcgccttttcccctccccgtgaagtcaatcgaaactggattactgccggatggagcatcaaagtttgt |
223 |
Q |
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| T |
40081543 |
atcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgt |
40081444 |
T |
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| Q |
224 |
ctaatgcaccatgcatgacattg |
246 |
Q |
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||| |||| |||| || |||||| |
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| T |
40081443 |
ctagtgcaacatgtattacattg |
40081421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 22012641 - 22012756
Alignment:
| Q |
111 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccctccccgtgaagtcaatcgaaactggattactgccggatggag |
210 |
Q |
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||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||| ||||||||||||| || | ||| || ||||| ||||| |||| |
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| T |
22012641 |
tatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggagggag |
22012740 |
T |
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| Q |
211 |
catcaaagtttgtcta |
226 |
Q |
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| T |
22012741 |
caacaaagttcgtcta |
22012756 |
T |
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