View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9612A_low_159 (Length: 246)
Name: NF9612A_low_159
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_159 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 24125290 - 24125520
Alignment:
| Q |
1 |
aagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcaccccccatcgccctactctattag |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24125290 |
aagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgccctactctattag |
24125389 |
T |
|
| Q |
101 |
ctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatga-ttttttcttcaacggaaccattttcagaaagaaaaacaagtggaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24125390 |
ctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaaaacaagtggaa |
24125489 |
T |
|
| Q |
200 |
agttgattccacatgtgtcccatagagagca |
230 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
24125490 |
agttgattccacatgtgtcctatagagagca |
24125520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 45163323 - 45163235
Alignment:
| Q |
134 |
taataggtacatgatgtatgatt--ttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
221 |
Q |
| |
|
|||||||||||||||||||| || ||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
45163323 |
taataggtacatgatgtatggttatttttctttgaaggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University