View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_16 (Length: 431)
Name: NF9612A_low_16
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 40869759 - 40869334
Alignment:
| Q |
1 |
gaatggtgggttgtaggatggagatggaatgatggttaatttctaaggatgtgaagaaacaaaaggatccagttggtgctgcagatagtccagattggtt |
100 |
Q |
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| T |
40869759 |
gaatggtgggttgtaggatggagatggaatgatggttaatttctaaggatgtgaagaaacaaaaggatccagttggtgctgcagatagtccagattggtt |
40869660 |
T |
|
| Q |
101 |
ccccctaagttctggatctacttatgaaggataattggtccatttgaagaatgagttgctcagtgtctcgtataaataagtgtctaatctagcataaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869659 |
ccccctaagttctggatctacttatgaaggataattggtccatttgaagaatgagttgctcagtgtctcgtataaataagtgtctaatctagcataaaat |
40869560 |
T |
|
| Q |
201 |
caatgagtgataattcattttatcaactctttttcacaggtgaaaattcttagaacacaatactgttggatcttacagagcataaatcagtttgagtttc |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869559 |
caacgagtgataattcattttatcaactctttttcacaggtgaaaattcttagaacacaatactgttggatcttacagagcataaatcagtttgagtttc |
40869460 |
T |
|
| Q |
301 |
agggaaagcaaataactgctaataaggatcaagaaatccagttaatgcnnnnnnnnatgtacgatatcagattacagaccctatggcacattcttacctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869459 |
agggaaagcaaataactgctaataaggatcaagaaatccagttaatgcttttctttatgtacgatatcagattacagaccctatggcacattcttacctt |
40869360 |
T |
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| Q |
401 |
gataaaatgatattagatagctacat |
426 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40869359 |
gataaaatgatattagatagctacat |
40869334 |
T |
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