View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_161 (Length: 245)
Name: NF9612A_low_161
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_161 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2621713 - 2621490
Alignment:
| Q |
1 |
atcccgcggaatatttgaacagcaaaaccccatgaaactgaaatagtccatctcttttctttgtcgtagcagatggattgttgaatgagtcctgctgagt |
100 |
Q |
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| T |
2621713 |
atcccgcggaatatttgaacagcaaaaccccatgaaactgaaatagtccatctcttttctttgtcgtagcagatggattgttgaatgagtcctgctgagt |
2621614 |
T |
|
| Q |
101 |
cgagcttcattggtattgtaagtcgttgaagtgcttctactcttgtggcattagggaagattggctcaaccacatcaagatggtgcagtgataccaatgg |
200 |
Q |
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| T |
2621613 |
cgagcttcattggtattgtaaggcgttgaagtgcttctactcttgtggcattagggaagattggctcaaccacatcaagatggtgcagtgataccaatgg |
2621514 |
T |
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| Q |
201 |
agttactggatgagctgcaagaag |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2621513 |
agttactggatgagctgcaagaag |
2621490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 41316940 - 41317157
Alignment:
| Q |
7 |
cggaatatttgaacagcaaaaccccatgaaactgaaatagtccatctcttttctttgtcgtagcagatggattgttgaatgagtcctgctgagtcgagct |
106 |
Q |
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|||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||||| || ||||| ||||||||||| |||| |
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| T |
41316940 |
cggaatatctgaacagcaaaaccccatgaaacagaaacagtccagtgctttgatttgtcgtagcagatggattgctgcatgagccctgctgagtcaagct |
41317039 |
T |
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| Q |
107 |
tcattggtattgtaagtcgttgaagtgcttctactcttgtggcattagggaagattggctcaaccacatcaagatggtgcagtgataccaatggagttac |
206 |
Q |
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| T |
41317040 |
tcattggtattgtcaaccgttggagggcttctacgcgagtcacattggggaagattggctcaaccacgtcaaggtggtgcagtgacactaatggagtcac |
41317139 |
T |
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| Q |
207 |
tggatgagctgcaagaag |
224 |
Q |
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||||| | ||||||||| |
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| T |
41317140 |
cggatgcgatgcaagaag |
41317157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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