View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_162 (Length: 245)
Name: NF9612A_low_162
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_162 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 37317002 - 37317210
Alignment:
| Q |
20 |
catcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37317002 |
catcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtaaattccttgagccttacccacaagtttcgagtcacg |
37317101 |
T |
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| Q |
120 |
ttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgcta |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317102 |
ttcaggaccagcagtcaatgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgcta |
37317201 |
T |
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| Q |
220 |
ggttttggt |
228 |
Q |
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||||||||| |
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| T |
37317202 |
ggttttggt |
37317210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 37324562 - 37324770
Alignment:
| Q |
20 |
catcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37324562 |
catcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaagtgtaaattccttgagccttacccacaagtttcgagtcacg |
37324661 |
T |
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| Q |
120 |
ttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgcta |
219 |
Q |
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| T |
37324662 |
ttcgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctataaataccatgctt |
37324761 |
T |
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| Q |
220 |
ggttttggt |
228 |
Q |
| |
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||||||||| |
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| T |
37324762 |
ggttttggt |
37324770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 37320581 - 37320789
Alignment:
| Q |
20 |
catcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacg |
119 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| || ||||| |
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| T |
37320581 |
catcagtgaatgtcatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagttttgattcacg |
37320680 |
T |
|
| Q |
120 |
ttcaggaccagccgtcaatgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgcta |
219 |
Q |
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||| || ||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320681 |
ttcgggtccagccgtcaaggggtcatccatcgccacaactgtcccgaatggcaaggcattttttaccttgccattgggctcagctacaaataccatgcta |
37320780 |
T |
|
| Q |
220 |
ggttttggt |
228 |
Q |
| |
|
||||||||| |
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|
| T |
37320781 |
ggttttggt |
37320789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 37306674 - 37306807
Alignment:
| Q |
37 |
gtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtatattccttgagccttacccacaagtttcgagtcacgttcaggaccagccgtca |
136 |
Q |
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||||| |||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||||||| |||||||||||| ||||||| ||| ||||| |
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| T |
37306674 |
gtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtca |
37306773 |
T |
|
| Q |
137 |
atgggtcatccatggccacaacggtcccgaatgg |
170 |
Q |
| |
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| || |||||||||||||| || ||||||||||| |
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| T |
37306774 |
acggatcatccatggccaccactgtcccgaatgg |
37306807 |
T |
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