View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_163 (Length: 245)

Name: NF9612A_low_163
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_163
NF9612A_low_163
[»] chr3 (1 HSPs)
chr3 (4-240)||(35992548-35992787)
[»] chr6 (3 HSPs)
chr6 (9-75)||(10004114-10004180)
chr6 (9-75)||(9998398-9998464)
chr6 (12-75)||(9991243-9991306)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 35992787 - 35992548
Alignment:
Q  4 atgaatagttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgcaagatggaagaaaagttacatgatatgta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35992787 atgaatagttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgcaagatggaagaaaagttacatgatatgta 35992688  T
Q  104 gctatctaca---tcnnnnnnngacttaagttcnnnnnnnnnnnttaattggaaatctatttagataaattgttttaccctgaaccgcagtttgttcttg 200  Q
    ||||||||||   ||       |||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35992687 gctatctacatcttctttttttgacttaagttcaatttttttttttaattggaaatctatttagataaattgttttaccctgaaccgcagtttgttcttg 35992588  T
Q  201 aggtaaccagtgacaagatcacggttagcatgcatctttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35992587 aggtaaccagtgacaagatcacggttagcatgcatctttt 35992548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 10004180 - 10004114
Alignment:
Q  9 tagttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgca 75  Q
    ||||||||||||||||| || || || | |||||| |||| ||||||||||||||||||||||||||    
T  10004180 tagttagcatgaggaggtgaagttatcctgtcaattcccttccaatctgatatgacaaaaccctgca 10004114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 9998464 - 9998398
Alignment:
Q  9 tagttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgca 75  Q
    ||||||||||||||||| || || || | ||| || |||| ||||||||||||||||||||||||||    
T  9998464 tagttagcatgaggaggtgaagttatcctgtcgattccctcccaatctgatatgacaaaaccctgca 9998398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 9991306 - 9991243
Alignment:
Q  12 ttagcatgaggaggagaggtaattcggtcaataccctgccaatctgatatgacaaaaccctgca 75  Q
    ||||||||||| || || || || | |||||| |||| ||||||||||||||||||||||||||    
T  9991306 ttagcatgaggcggggaagttatcctgtcaattccctcccaatctgatatgacaaaaccctgca 9991243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University