View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_167 (Length: 244)

Name: NF9612A_low_167
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_167
NF9612A_low_167
[»] chr4 (8 HSPs)
chr4 (1-239)||(25178935-25179173)
chr4 (5-172)||(25167300-25167467)
chr4 (5-171)||(25253840-25254006)
chr4 (23-72)||(22592768-22592817)
chr4 (9-70)||(25002426-25002487)
chr4 (9-60)||(25044570-25044621)
chr4 (29-70)||(7732698-7732739)
chr4 (89-173)||(25158837-25158921)
[»] chr3 (1 HSPs)
chr3 (77-173)||(9215417-9215513)
[»] chr5 (1 HSPs)
chr5 (20-171)||(30363041-30363192)
[»] chr2 (1 HSPs)
chr2 (20-144)||(42164782-42164906)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 25179173 - 25178935
Alignment:
Q  1 aatgaaatgcagggctggtgtaaatgtaaagggatactttgcatggtctctgttggataattttgaatggcataggggttatactgtgagatttggaatg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25179173 aatgaaatgcagagctggtgtaaatgtaaagggatactttgcatggtctctgttggataattttgaatggcataggggttatactgtgagatttggaatg 25179074  T
Q  101 acttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctcacgttagacaccagaatttatagagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25179073 acttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctcacgttagacaccagaatttatagagaat 25178974  T
Q  201 cgatctaacattgcttcaaaattccttataaacaccata 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25178973 cgatctaacattgcttcaaaattccttataaacaccata 25178935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 25167467 - 25167300
Alignment:
Q  5 aaatgcagggctggtgtaaatgtaaagggatactttgcatggtctctgttggataattttgaatggcataggggttatactgtgagatttggaatgactt 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||||||| |    
T  25167467 aaatacagggctggtgtaaatgtaaagggatactttgcatggtctttgttggacaattttgaatggcataaaggttatactgtgagatttggaatgacat 25167368  T
Q  105 ttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctc 172  Q
    |  ||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  25167367 tcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc 25167300  T

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Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 25253840 - 25254006
Alignment:
Q  5 aaatgcagggctggtgtaaatgtaaagggatactttgcatggtctctgttggataattttgaatggcataggggttatactgtgagatttggaatgactt 104  Q
    |||| |||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||| |  |||||||||||||||||||||||||| |    
T  25253840 aaatacagggctggtgtaaatgtcaagggatactttgcatggtccttgttggacaattttgaatggcacaaaggttatactgtgagatttggaatgacct 25253939  T
Q  105 ttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttct 171  Q
    || ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  25253940 ttgtagattacaaaaatggtttgaaaagatatcaaaagctctcagggttgtggttcaagaattttct 25254006  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 22592768 - 22592817
Alignment:
Q  23 aatgtaaagggatactttgcatggtctctgttggataattttgaatggca 72  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  22592768 aatgtaaacggatactttgcatggtctttgttggataattttgaatggca 22592817  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 25002426 - 25002487
Alignment:
Q  9 gcagggctggtgtaaatgtaaagggatactttgcatggtctctgttggataattttgaatgg 70  Q
    |||||| ||| || |||||||||||||||||||| |||||  |||||||||| |||||||||    
T  25002426 gcagggatggcgtgaatgtaaagggatactttgcgtggtcgttgttggataactttgaatgg 25002487  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 25044621 - 25044570
Alignment:
Q  9 gcagggctggtgtaaatgtaaagggatactttgcatggtctctgttggataa 60  Q
    |||||| |||||| |||||||||||||| |||||||||||  ||||||||||    
T  25044621 gcagggatggtgtgaatgtaaagggatattttgcatggtcattgttggataa 25044570  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 7732698 - 7732739
Alignment:
Q  29 aagggatactttgcatggtctctgttggataattttgaatgg 70  Q
    |||||||||||||| ||||| |||||||| ||||||||||||    
T  7732698 aagggatactttgcgtggtcactgttggacaattttgaatgg 7732739  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 25158921 - 25158837
Alignment:
Q  89 agatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca 173  Q
    |||||||||||||| ||| | ||||| ||  |||| ||||||||||| || ||| | || | ||||||||| |||||||||||||    
T  25158921 agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctca 25158837  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 9215417 - 9215513
Alignment:
Q  77 ggttatactgtgagatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca 173  Q
    |||||| ||||||||||||||||||| ||| | ||||||||  ||||||||||||||||  | || ||||| | |||||||||||||||||||||||    
T  9215417 ggttattctgtgagatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctca 9215513  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 30363041 - 30363192
Alignment:
Q  20 gtaaatgtaaagggatactttgcatggtctctgttggataattttgaatggcataggggttatactgtgagatttggaatgacttttatagattacaaag 119  Q
    ||||||||||| ||||| ||||| ||||| || ||||| ||||||||||||  |   || || || ||||| ||||||||||  ||| ||||||||||      
T  30363041 gtaaatgtaaaaggatattttgcgtggtcgctattggacaattttgaatggggtgaagggtacacagtgaggtttggaatgaactttgtagattacaaca 30363140  T
Q  120 atggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttct 171  Q
    |||  |||||||||||||||||||| |||| |   |||||||||||||||||    
T  30363141 atgacttgaaaagatatcaaaagctctcagcacaatggttcaagaattttct 30363192  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 42164906 - 42164782
Alignment:
Q  20 gtaaatgtaaagggatactttgcatggtctctgttggataattttgaatgg-cataggggttatactgtgagatttggaatgacttttatagattacaaa 118  Q
    |||||| |||| ||||| |||||||||||  || | || |||||||||||| |||  ||||||||| ||| | ||||| || | |||| | |||||||||    
T  42164906 gtaaatataaaaggatattttgcatggtcattgctcgacaattttgaatggtcat-cgggttatacagtgcgctttggcatcaattttgtggattacaaa 42164808  T
Q  119 gatggtttgaaaagatatcaaaagct 144  Q
     ||||||||| |||| ||||||||||    
T  42164807 aatggtttgacaagacatcaaaagct 42164782  T

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