View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_169 (Length: 244)
Name: NF9612A_low_169
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_169 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 28529534 - 28529741
Alignment:
| Q |
7 |
tcgaagaatatttcaatatgaaaatgccagtactctcctgctacnnnnnnnngttgtaa--atttactcaccatttcccattcattgtgtgcaggacttt |
104 |
Q |
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| T |
28529534 |
tcgaaaaatatttcaatatgaaaatgccagtactctcctgctactttcttttgttgttataatttactcaccatttcccattcattgtgtgcaggacttt |
28529633 |
T |
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| Q |
105 |
aattgtattgctatcgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
204 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28529634 |
aattgtattgctattgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
28529733 |
T |
|
| Q |
205 |
ctaaatat |
212 |
Q |
| |
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|| ||||| |
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| T |
28529734 |
ctcaatat |
28529741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 27926778 - 27926709
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttct |
206 |
Q |
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| T |
27926778 |
aacacttgttgtacttagaagcataactgatattgtgtatctcttgaacattcttctccaggtaatttct |
27926709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 28056415 - 28056484
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttct |
206 |
Q |
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| T |
28056415 |
aacactagttatacttagaagcataactgatgttgtgtatctcttgaacattcttctccaggtaatttct |
28056484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 28087056 - 28087123
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
204 |
Q |
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|||||||||| | ||||||||||| | ||| |||| ||| |||| |||||||||||||||||||||| |
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| T |
28087056 |
aacacttgttgtacttagaagcataaccgatgttgtgtatctcttgaacattcttctccaggtaattt |
28087123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 1435719 - 1435788
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttct |
206 |
Q |
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|||||||||||| ||||||||||| |||| |||| ||| || | ||||||||||| |||||||||||| |
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| T |
1435719 |
aacacttgttttacttagaagcatatttgatgttgtgtatctcctgaacattcttcttcaggtaatttct |
1435788 |
T |
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