View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_172 (Length: 243)
Name: NF9612A_low_172
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_172 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 43384110 - 43383963
Alignment:
| Q |
16 |
atgaaacatacatgagcaacggtgat----gatgacctaataacttaactaagtagtaaaatatatattagaagagtaaagaagaagaaattaattaatt |
111 |
Q |
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| T |
43384110 |
atgaaacaaacatgagcaacggtgatcgatgatgacctaataacttaattaagtagtaaaatatatattagaagagtaaagaagaagaaattaattaatt |
43384011 |
T |
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| Q |
112 |
aaagtcccaacctcaaatcaagagtgaggggagaagaagaatgattat |
159 |
Q |
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| T |
43384010 |
aaagtcccaacctcaaatcaagagtgaggggagaagaagaatgattat |
43383963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 25870684 - 25870636
Alignment:
| Q |
108 |
aattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgat |
156 |
Q |
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| T |
25870684 |
aattaaagtcacaacctcaaatgaagagtgaggggagaagaagaatgat |
25870636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 43383943 - 43383903
Alignment:
| Q |
203 |
tggaaaagggaaattcatgtcaaatggtagtgttggtgttg |
243 |
Q |
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| T |
43383943 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttg |
43383903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 25870613 - 25870575
Alignment:
| Q |
203 |
tggaaaagggaaattcatgtcaaatggtagtgttggtgt |
241 |
Q |
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| T |
25870613 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgt |
25870575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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