View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_175 (Length: 243)
Name: NF9612A_low_175
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_175 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 24301046 - 24301254
Alignment:
| Q |
18 |
tcaatttagacatatcatattttatttccaaccctacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcatttgggcttcgaa |
117 |
Q |
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| T |
24301046 |
tcaacttagacatatcatattttatttccaaccatacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcacttgggctttgaa |
24301145 |
T |
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| Q |
118 |
gcccgcagtgtgggttcggatgagcatctgtttagagctattgatgagcttttttcaactcaacgaggaaacttttcttcaacattgatcagagtccact |
217 |
Q |
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|||||||||||||||| |||| ||| |||||| |||| ||| ||||||||| | || |||| ||||||||||||||||||||||||||||||||| |
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| T |
24301146 |
gcccgcagtgtgggttatgatgcgcacctgtttggagccatttatgagctttcatacgcttaacggagaaacttttcttcaacattgatcagagtccact |
24301245 |
T |
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| Q |
218 |
ccaacactt |
226 |
Q |
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||||||||| |
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| T |
24301246 |
ccaacactt |
24301254 |
T |
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