View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_176 (Length: 243)
Name: NF9612A_low_176
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_176 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 8293622 - 8293848
Alignment:
| Q |
11 |
gtgttaatttctctgattccagatattttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggttt |
110 |
Q |
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| T |
8293622 |
gtgttaatttctctgattccagatattttgttgctgcgttttgtatagcgtccgtgtcatgtgcatttgatctccatataattaattgcatctctggttt |
8293721 |
T |
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| Q |
111 |
aggtgctannnnnnnaataacaaatgtagaatattagtatgttaatagttaggttatcattgttttctctcgtgacgattaatttgattatcagtctctg |
210 |
Q |
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| T |
8293722 |
aggtgctatttttttaataacaaatgtagaatattagtatgttaatagttaggttagtattgttttctctcgtgacgattaaattgattatcagtttctg |
8293821 |
T |
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| Q |
211 |
caatgtacacgtttctgttgtttttat |
237 |
Q |
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| T |
8293822 |
caatgtacacgtttctgttgtttttat |
8293848 |
T |
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