View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9612A_low_178 (Length: 242)

Name: NF9612A_low_178
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9612A_low_178
NF9612A_low_178
[»] chr7 (18 HSPs)
chr7 (42-210)||(22245648-22245816)
chr7 (103-207)||(8779870-8779973)
chr7 (103-223)||(8786709-8786828)
chr7 (126-207)||(4460240-4460322)
chr7 (55-119)||(15706623-15706685)
chr7 (85-189)||(48804528-48804632)
chr7 (123-190)||(39271738-39271805)
chr7 (112-201)||(4465218-4465305)
chr7 (123-189)||(12199774-12199840)
chr7 (143-207)||(4541729-4541794)
chr7 (166-210)||(8837126-8837169)
chr7 (121-207)||(11483298-11483383)
chr7 (62-156)||(17205939-17206030)
chr7 (143-199)||(17912155-17912211)
chr7 (95-183)||(25180617-25180705)
chr7 (56-156)||(13435462-13435556)
chr7 (147-207)||(4982619-4982680)
chr7 (143-199)||(30063424-30063480)
[»] chr6 (34 HSPs)
chr6 (55-192)||(25949900-25950037)
chr6 (60-192)||(25964494-25964632)
chr6 (60-192)||(25969141-25969279)
chr6 (60-192)||(25973581-25973719)
chr6 (103-223)||(26018505-26018624)
chr6 (55-119)||(17744102-17744166)
chr6 (103-223)||(26139209-26139328)
chr6 (95-189)||(17283443-17283537)
chr6 (59-199)||(14894001-14894139)
chr6 (143-223)||(26157878-26157957)
chr6 (145-213)||(29094098-29094168)
chr6 (143-207)||(19695972-19696037)
chr6 (165-210)||(19994157-19994202)
chr6 (143-228)||(20217940-20218024)
chr6 (143-228)||(22111965-22112049)
chr6 (55-119)||(4188807-4188870)
chr6 (123-199)||(15172794-15172869)
chr6 (55-119)||(19074705-19074768)
chr6 (123-223)||(25338675-25338775)
chr6 (59-189)||(24512169-24512297)
chr6 (143-201)||(26822425-26822483)
chr6 (126-223)||(25922827-25922924)
chr6 (125-190)||(26474531-26474596)
chr6 (143-223)||(25508136-25508215)
chr6 (111-189)||(18233244-18233322)
chr6 (59-133)||(19569539-19569611)
chr6 (166-223)||(18627978-18628036)
chr6 (55-109)||(23492974-23493027)
chr6 (55-92)||(18449443-18449480)
chr6 (143-207)||(23346639-23346704)
chr6 (166-210)||(23523427-23523472)
chr6 (111-199)||(24392324-24392410)
chr6 (146-199)||(25030598-25030651)
chr6 (166-223)||(29254530-29254586)
[»] chr3 (22 HSPs)
chr3 (55-209)||(17051294-17051447)
chr3 (59-189)||(2722537-2722668)
chr3 (55-119)||(3244438-3244502)
chr3 (55-133)||(47975443-47975522)
chr3 (55-117)||(3249569-3249631)
chr3 (108-189)||(16034677-16034759)
chr3 (55-118)||(1991480-1991543)
chr3 (55-119)||(10607640-10607703)
chr3 (55-119)||(16384814-16384878)
chr3 (123-201)||(11826856-11826932)
chr3 (165-223)||(13418937-13418995)
chr3 (55-109)||(26169643-26169696)
chr3 (55-92)||(10601328-10601365)
chr3 (112-199)||(11577184-11577269)
chr3 (111-189)||(34053020-34053099)
chr3 (146-207)||(8685311-8685373)
chr3 (123-199)||(11848314-11848388)
chr3 (170-223)||(17210131-17210183)
chr3 (166-223)||(22039383-22039440)
chr3 (59-162)||(36079674-36079772)
chr3 (123-213)||(27407769-27407858)
chr3 (59-133)||(42243920-42243993)
[»] chr2 (13 HSPs)
chr2 (55-162)||(23341173-23341279)
chr2 (55-119)||(20282776-20282840)
chr2 (146-213)||(21344000-21344068)
chr2 (116-199)||(16440345-16440428)
chr2 (123-207)||(21131502-21131587)
chr2 (146-213)||(23704835-23704903)
chr2 (123-213)||(20851-20939)
chr2 (123-177)||(28496270-28496324)
chr2 (124-228)||(29576790-29576896)
chr2 (143-207)||(19012473-19012537)
chr2 (166-223)||(24365804-24365861)
chr2 (143-199)||(24322366-24322422)
chr2 (59-130)||(32440778-32440847)
[»] scaffold0360 (1 HSPs)
scaffold0360 (55-135)||(5487-5567)
[»] chr4 (13 HSPs)
chr4 (59-213)||(11902001-11902155)
chr4 (123-213)||(10731691-10731780)
chr4 (123-213)||(10945460-10945549)
chr4 (55-119)||(11048920-11048984)
chr4 (116-199)||(8561753-8561836)
chr4 (165-210)||(9192801-9192846)
chr4 (143-207)||(11921907-11921972)
chr4 (55-119)||(40559949-40560012)
chr4 (59-133)||(10731824-10731896)
chr4 (59-133)||(10945593-10945665)
chr4 (143-201)||(5676038-5676096)
chr4 (123-177)||(7197831-7197885)
chr4 (124-201)||(25190753-25190828)
[»] scaffold0175 (1 HSPs)
scaffold0175 (55-119)||(11981-12045)
[»] chr8 (10 HSPs)
chr8 (59-189)||(15760162-15760290)
chr8 (55-119)||(33633100-33633163)
chr8 (59-189)||(25397534-25397662)
chr8 (123-189)||(22285577-22285643)
chr8 (143-207)||(18008665-18008730)
chr8 (55-109)||(23694436-23694488)
chr8 (55-136)||(14877701-14877779)
chr8 (143-223)||(21319970-21320052)
chr8 (123-189)||(42417935-42418001)
chr8 (59-119)||(18959829-18959887)
[»] scaffold0197 (1 HSPs)
scaffold0197 (59-188)||(8210-8332)
[»] chr5 (12 HSPs)
chr5 (55-136)||(20915363-20915444)
chr5 (55-119)||(25577011-25577074)
chr5 (55-119)||(34780974-34781037)
chr5 (123-207)||(12411089-12411174)
chr5 (143-207)||(16677640-16677705)
chr5 (116-189)||(20167624-20167697)
chr5 (165-210)||(20738902-20738947)
chr5 (123-190)||(21382859-21382926)
chr5 (111-189)||(21999945-22000024)
chr5 (55-92)||(20968407-20968444)
chr5 (125-162)||(23435933-23435970)
chr5 (125-162)||(23447300-23447337)
[»] scaffold0713 (1 HSPs)
scaffold0713 (103-210)||(6128-6234)
[»] chr1 (18 HSPs)
chr1 (55-119)||(17987221-17987285)
chr1 (59-201)||(21240636-21240778)
chr1 (55-119)||(18379595-18379659)
chr1 (55-118)||(41228946-41229008)
chr1 (63-190)||(41802853-41802973)
chr1 (111-183)||(39286041-39286114)
chr1 (59-119)||(23289364-23289423)
chr1 (59-189)||(17717344-17717472)
chr1 (115-188)||(8649471-8649545)
chr1 (166-223)||(49056014-49056072)
chr1 (55-119)||(44538852-44538914)
chr1 (55-119)||(20405365-20405428)
chr1 (59-130)||(20412893-20412962)
chr1 (123-190)||(28208464-28208531)
chr1 (143-207)||(20498118-20498183)
chr1 (143-207)||(20860157-20860222)
chr1 (146-199)||(23299459-23299512)
chr1 (143-207)||(25404542-25404607)
[»] scaffold0142 (1 HSPs)
scaffold0142 (55-119)||(24621-24684)
[»] scaffold0046 (1 HSPs)
scaffold0046 (55-119)||(21121-21184)
[»] scaffold0022 (1 HSPs)
scaffold0022 (55-119)||(53461-53524)
[»] scaffold0450 (1 HSPs)
scaffold0450 (55-119)||(79-142)
[»] scaffold0093 (1 HSPs)
scaffold0093 (55-119)||(27660-27723)
[»] scaffold0081 (1 HSPs)
scaffold0081 (59-119)||(51133-51192)
[»] scaffold0021 (2 HSPs)
scaffold0021 (55-119)||(13701-13764)
scaffold0021 (85-223)||(100753-100886)
[»] scaffold0168 (1 HSPs)
scaffold0168 (111-189)||(8261-8340)
[»] scaffold0031 (1 HSPs)
scaffold0031 (111-189)||(23853-23932)
[»] scaffold0251 (1 HSPs)
scaffold0251 (55-92)||(18294-18331)
[»] scaffold0125 (1 HSPs)
scaffold0125 (55-92)||(43335-43372)
[»] scaffold0001 (2 HSPs)
scaffold0001 (140-207)||(521313-521381)
scaffold0001 (55-119)||(182055-182118)
[»] scaffold0098 (1 HSPs)
scaffold0098 (116-190)||(43743-43817)
[»] scaffold0443 (1 HSPs)
scaffold0443 (123-207)||(3905-3990)
[»] scaffold0362 (1 HSPs)
scaffold0362 (114-223)||(8655-8763)
[»] scaffold0213 (1 HSPs)
scaffold0213 (59-92)||(15940-15973)
[»] scaffold0123 (1 HSPs)
scaffold0123 (143-207)||(14644-14709)
[»] scaffold0074 (1 HSPs)
scaffold0074 (111-199)||(22169-22255)
[»] scaffold0049 (1 HSPs)
scaffold0049 (111-199)||(31687-31773)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 22245648 - 22245816
Alignment:
Q  42 gcaaatgctactattttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgc 141  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22245648 gcaaatgctactattttaataatgattagatgaaagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgc 22245747  T
Q  142 tttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22245748 tttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatatt 22245816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 8779870 - 8779973
Alignment:
Q  103 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaac 202  Q
    ||||||| ||||||||| |||||||||| | ||  | || |||||||||||||| | ||| | | ||||||||||| |||| ||||||||||||||||||    
T  8779870 tttaattaaaagaaaataacaataataaaataaaagcgccttgggattattggttcatcataataacaaacccttcacaaa-caaaccctaaacctaaac 8779968  T
Q  203 tttat 207  Q
    |||||    
T  8779969 tttat 8779973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 8786709 - 8786828
Alignment:
Q  103 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaac 202  Q
    ||||||| ||||||||| |||||||||| | ||  | || ||| |||||||||| | ||| | | ||||||||||| |||| ||||||||||||||||||    
T  8786709 tttaattaaaagaaaataacaataataaaataaaagcgccttgagattattggttcatcataataacaaacccttcacaaa-caaaccctaaacctaaac 8786807  T
Q  203 tttatattagagcaactttct 223  Q
    |||||||| || | |||||||    
T  8786808 tttatatttgacctactttct 8786828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 4460240 - 4460322
Alignment:
Q  126 aataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||| ||||| |||||||||||||| |||||  |||||||| ||||| |||| |||||| |||||||| ||||||||    
T  4460240 aataataaaaaggtgccttgggattattggttcgtcatggtgacaaatccttcacaaaccaaaccttaaacctagaactttat 4460322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 15706623 - 15706685
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| |||||||||||||  |||| ||| |||||||||| |||||||||    
T  15706623 ttttaataatgattagatgaaagtttcaaaggtt--aaaagttggatttttaattaaaagaaaat 15706685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 48804632 - 48804528
Alignment:
Q  85 ggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaat 184  Q
    ||||| ||| |||| ||||||||  ||| |||||| ||||||||||||||| || || || ||||||||||| | ||| | ||||||||||||| ||||     
T  48804632 ggttataaagtttggatttttaacagaatgaaaataacaataataataaaaaggcgccttcggattattggtacatcataatgacaaacccttcacaaac 48804533  T
Q  185 caaac 189  Q
    |||||    
T  48804532 caaac 48804528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 39271805 - 39271738
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaacc 190  Q
    |||||||||||||| | || ||||||||||||||||||||  | |||||||||||| |||| ||||||    
T  39271805 aataataataaaagagagccttgggattattggtccgtcatggcgacaaacccttcacaaaccaaacc 39271738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 4465218 - 4465305
Alignment:
Q  112 aagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaa 201  Q
    |||||||| |||||||||||||||| ||   | ||||||||| || |||||  |||||||| ||||| |||| |||||||||||||||||    
T  4465218 aagaaaataacaataataataaaagcgtc--tagggattattagttcgtcatggtgacaaatccttcacaaaccaaaccctaaacctaaa 4465305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 12199840 - 12199774
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||||||||||||| | || ||||||| ||||||||||||  |||||||||||||| |||| |||||    
T  12199840 aataataataaaagagagccttgggatcattggtccgtcacggtgacaaacccttcacaaaccaaac 12199774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 4541794 - 4541729
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  |||||||| ||||| |||| ||||||||||||||| ||||||||    
T  4541794 ttgggattattggttcgtcatggtgacaaatccttcacaaaccaaaccctaaacctagaactttat 4541729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 8837169 - 8837126
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaacctaaactttatatt 210  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  8837169 tgacaaacccttcacaaa-caaaccctaaacctaaactttatatt 8837126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 11483298 - 11483383
Alignment:
Q  121 acaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||||| |  | || ||||||||||||| |||  |||||||||||| | |||| ||||||||||||||| ||||||||    
T  11483298 acaataataataaaagcg--ccttaggattattggtccatcatggtgacaaaccctacacaaaccaaaccctaaacctagaactttat 11483383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 17205939 - 17206030
Alignment:
Q  62 aatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggt 156  Q
    |||| |||||||||||||| |   |||||||| |||| ||||||| |||||  ||||| |||||| |||||||| ||||  ||||||||||||||    
T  17205939 aatggttagatgagagtttaa---gttaaaaagtttggatttttatttgaattaaaataacaatagtaataaaaaggtgtcttgggattattggt 17206030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 17912211 - 17912155
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    |||||||||||||| |||||  |||||||| ||||| |||| |||||||||||||||    
T  17912211 ttgggattattggttcgtcatggtgacaaatccttcacaaaccaaaccctaaaccta 17912155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 25180617 - 25180705
Alignment:
Q  95 tttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaa 183  Q
    |||||||||||||  ||| |||||| ||||||||||||||| ||||  ||||||| |||||||| | |  |||||||| ||||| ||||    
T  25180617 tttgaatttttaacagaatgaaaataacaataataataaaaaggtgtcttgggatcattggtccattatggtgacaaatccttcacaaa 25180705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 13435556 - 13435462
Alignment:
Q  56 tttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattgg 155  Q
    |||||||||||||||||||||||||   || ||| ||| |||| | |||||||| |||||||||   ||||||||||||| || || |||||||||||||    
T  13435556 tttaataatgattagatgagagttt--gagattataaagtttggaattttaattaaaagaaaat---aataataataaaa-ggagccttgggattattgg 13435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 4982619 - 4982680
Alignment:
Q  147 gattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    ||||||||||  ||||  |||||||||||||| |||| ||||||||||||||| ||||||||    
T  4982619 gattattggtttgtcatggtgacaaacccttcacaaaccaaaccctaaacctagaactttat 4982680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 30063424 - 30063480
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    |||||||||||||| |||||  |||||||| |||||  ||| |||||||||||||||    
T  30063424 ttgggattattggttcgtcatggtgacaaatccttcagaaaccaaaccctaaaccta 30063480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 25950037 - 25949900
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattg 154  Q
    |||||||| ||||||||||| ||||||||| |||||||| |||| |||||||||  ||||||||| ||||||||||||||||||||  ||||||||||||    
T  25950037 ttttaatactgattagatgaaagtttcaaacgttaaaaagtttggatttttaatcaaaagaaaataacaataataataaaagggtgtcttgggattattg 25949938  T
Q  155 gtccgtcaaagtgacaaacccttctcaaatcaaaccct 192  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  25949937 gtccgtcaaagtgacaaacccttctcaatccaaaccct 25949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 25964632 - 25964494
Alignment:
Q  60 ataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa------aagggtgctttgggattatt 153  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||  ||||||||||||      ||||||||  ||||||||||    
T  25964632 ataatgattagatgaaagtttcaaaagttaaaaagtttggatttttaattgaaagaaaataccaataataataataataaaagggtgccctgggattatt 25964533  T
Q  154 ggtccgtcaaagtgacaaacccttctcaaatcaaaccct 192  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  25964532 ggtccgtcaaagtgacaaacccttctcaatccaaaccct 25964494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 25969279 - 25969141
Alignment:
Q  60 ataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa------aagggtgctttgggattatt 153  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||  ||||||||||||      ||||||||  ||||||||||    
T  25969279 ataatgattagatgaaagtttcaaaagttaaaaagtttggatttttaattgaaagaaaataccaataataataataataaaagggtgccctgggattatt 25969180  T
Q  154 ggtccgtcaaagtgacaaacccttctcaaatcaaaccct 192  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  25969179 ggtccgtcaaagtgacaaacccttctcaatccaaaccct 25969141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 25973719 - 25973581
Alignment:
Q  60 ataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa------aagggtgctttgggattatt 153  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||  ||||||||||||      ||||||||  ||||||||||    
T  25973719 ataatgattagatgaaagtttcaaaagttaaaaagtttggatttttaattgaaagaaaataccaataataataataataaaagggtgccctgggattatt 25973620  T
Q  154 ggtccgtcaaagtgacaaacccttctcaaatcaaaccct 192  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  25973619 ggtccgtcaaagtgacaaacccttctcaatccaaaccct 25973581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 26018624 - 26018505
Alignment:
Q  103 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaac 202  Q
    ||||||| ||||||||| |||||||||| | ||  | || |||||||||||||| ||||| ||||||||  ||||| |||| ||||||||||||||||||    
T  26018624 tttaattaaaagaaaataacaataataaaataaaagcgccttgggattattggttcgtcatagtgacaattccttcacaaa-caaaccctaaacctaaac 26018526  T
Q  203 tttatattagagcaactttct 223  Q
    |||||||| || | |||||||    
T  26018525 tttatattggacctactttct 26018505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 17744166 - 17744102
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| | |||||||||||||||| |||| |||||||||| |||||||||    
T  17744166 ttttaataatgattagatgaaaatttcaaaggttaaaaagtttggatttttaattaaaagaaaat 17744102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 26139328 - 26139209
Alignment:
Q  103 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaac 202  Q
    ||||||| ||||||||| | |||||||| | ||  | || |||||||||||||| ||||| ||||||||  ||||| |||| ||||||||||||||||||    
T  26139328 tttaattaaaagaaaataataataataaaataatagcgccttgggattattggttcgtcatagtgacaattccttcacaaa-caaaccctaaacctaaac 26139230  T
Q  203 tttatattagagcaactttct 223  Q
    |||||||| || | |||||||    
T  26139229 tttatattggacctactttct 26139209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 189
Target Start/End: Original strand, 17283443 - 17283537
Alignment:
Q  95 tttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||| ||||||||  ||| | |||| ||||||||||||||| ||||| |||||||||||||| ||||| | ||||||||||||| |||| |||||    
T  17283443 tttggatttttaaccgaatgtaaataacaataataataaaaaggtgcattgggattattggttcgtcataatgacaaacccttcacaaaccaaac 17283537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 14894139 - 14894001
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||| ||||| | |  ||||||| |||| ||||| ||||||| |||||| | ||||||||||| |  | || |||||||||||||| |    
T  14894139 aataatgattagatgaaagtttgaga--ttaaaaagtttggattttcaattgaatgaaaataataataataataataaagcgccttgggattattggttc 14894042  T
Q  159 gtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
     |||  |||||||| ||||| || | |||||||||||||||    
T  14894041 atcatggtgacaaatccttcacataccaaaccctaaaccta 14894001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 26157957 - 26157878
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    |||||||||||||| ||||| ||||||||  ||||| |||| |||||||||||||||||||||||||| || | |||||||    
T  26157957 ttgggattattggttcgtcatagtgacaattccttcacaaa-caaaccctaaacctaaactttatattggacctactttct 26157878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 29094168 - 29094098
Alignment:
Q  145 gggattattggtccgtcaaagtgacaaacccttctc-aaatcaaaccctaaacct-aaactttatattaga 213  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||| ||||||| ||||||||| |||||    
T  29094168 gggattattggtccgtcatggtgacaaacccttctcaaaatcaaaccttaaacctaaaactttatgttaga 29094098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 19696037 - 19695972
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  |||||||| ||||| |||||||||||||||||||| ||||||||    
T  19696037 ttgggattattggttcgtcatggtgacaaatccttcacaaatcaaaccctaaacctagaactttat 19695972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 19994202 - 19994157
Alignment:
Q  165 gtgacaaacccttctcaaatcaaaccctaaacctaaactttatatt 210  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||    
T  19994202 gtgacaaacccttcacaaaacaaaccctaaacctaaactttatatt 19994157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 20217940 - 20218024
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttctgatga 228  Q
    |||||||||||||| | ||| | | ||||||||||| |||| |||||||||||||||||||||||||| || | ||||||| ||||    
T  20217940 ttgggattattggttcatcataataacaaacccttcacaaa-caaaccctaaacctaaactttatatttgacctactttctaatga 20218024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 22111965 - 22112049
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttctgatga 228  Q
    |||||||||||||| | ||| | | ||||||||||| |||| |||||||||||||||||||||||||| || | ||||||| ||||    
T  22111965 ttgggattattggttcatcataataacaaacccttcacaaa-caaaccctaaacctaaactttatatttgacctactttctaatga 22112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 4188870 - 4188807
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  4188870 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 4188807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 15172869 - 15172794
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||||||| |  ||||||||||||||||| |||||  |||||||| ||||| |||| |||||||||||||||    
T  15172869 aataataataaaaagc-gctttgggattattggttcgtcatggtgacaaatccttcacaaaccaaaccctaaaccta 15172794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 19074705 - 19074768
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  19074705 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 19074768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 25338675 - 25338775
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttc 222  Q
    ||||||||||||| || || |||||||||||| | | ||  | ||||||||||||| ||   |||||||||||||||||||||||||| || | ||||||    
T  25338675 aataataataaaaaggcgccttgggattattgattcatcttaatgacaaacccttcacatcccaaaccctaaacctaaactttatattggacccactttc 25338774  T
Q  223 t 223  Q
    |    
T  25338775 t 25338775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 24512297 - 24512169
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||||||||| | |  ||| ||| |||  |||||||| |||| |||| | ||||||||||||||| || || ||| ||||||||||      
T  24512297 aataatgattagatgagagtttgaga--ttataaagttttgatttttaactgaatgaaattaacaataataataaaaaggcgccttgagattattggttt 24512200  T
Q  159 gtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||| | |||||||||| || |||| |||||    
T  24512199 gtcataatgacaaacccatcacaaaccaaac 24512169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 26822483 - 26822425
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaa 201  Q
    |||||||||||||| |||||  |||||||||||||| |||| |||||| ||||||||||    
T  26822483 ttgggattattggttcgtcatggtgacaaacccttcacaaaccaaaccttaaacctaaa 26822425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 25922827 - 25922924
Alignment:
Q  126 aataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    ||||||||||| | || ||| |||||||||| | ||   |||||||| |||||  ||| |||||||||||||||||||||||||| || | |||||||    
T  25922827 aataataaaagagcgccttgagattattggttcatcttggtgacaaatccttcataaaccaaaccctaaacctaaactttatattggacctactttct 25922924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 26474596 - 26474531
Alignment:
Q  125 taataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaacc 190  Q
    |||||||||||| | |||||||||||||||||||||||| | |||||| | ||| |||| ||||||    
T  26474596 taataataaaagagagctttgggattattggtccgtcaaggagacaaatctttcacaaaccaaacc 26474531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 25508215 - 25508136
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    |||||||||||||| | ||| ||||||||  ||||| |||| |||||||||||||| ||||||||||| || | |||||||    
T  25508215 ttgggattattggttcctcatagtgacaattccttcacaaa-caaaccctaaaccttaactttatattggacctactttct 25508136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 18233244 - 18233322
Alignment:
Q  111 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    ||||||||| |||||||||| ||||| ||||  |||||||||||||||| ||| ||||| ||||||||| |||| |||||    
T  18233244 aaagaaaataacaataataacaaaagaggtgtcttgggattattggtccatcatagtga-aaacccttcacaaaccaaac 18233322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 19569539 - 19569611
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 133  Q
    |||||||||||||||||||||| | |  ||| ||| |||| |||||||||| ||||||||| | |||||||||||    
T  19569539 aataatgattagatgagagtttgaga--ttataaagtttggatttttaattaaaagaaaataataataataataa 19569611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 18628036 - 18627978
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaaccta-aactttatattagagcaactttct 223  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||| || | |||||||    
T  18628036 tgacaaacccttcacaaaccaaaccctaaacctagaactttatattggatctactttct 18627978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 23493027 - 23492974
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaatt 109  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  23493027 ttttaaaaatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaatt 23492974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 18449480 - 18449443
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaa 92  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  18449480 ttttaataatgattagatgaaggtttcaaaggttaaaa 18449443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 23346639 - 23346704
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    ||||||||| |||| |||||  |||||||| ||||| |||| ||||||||||||||| ||||||||    
T  23346639 ttgggattactggttcgtcatggtgacaaatccttcacaaaccaaaccctaaacctataactttat 23346704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 23523427 - 23523472
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaaccta-aactttatatt 210  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||    
T  23523427 tgacaaacccttcacaaaccaaaccctaaacctagaactttatatt 23523472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 24392324 - 24392410
Alignment:
Q  111 aaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||| |||||||||||||||| |  | || |||||| | || |||||  |||||||| ||||| |||| |||||||||||||||    
T  24392324 aaagaaaataacaataataataaaagag--ccttaggattactagttcgtcatggtgacaaatccttcacaaaccaaaccctaaaccta 24392410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 25030598 - 25030651
Alignment:
Q  146 ggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||||||  ||  ||||||||||||||| |||| |||||||||||||||    
T  25030598 ggattattggtctatcttagtgacaaacccttcacaaaccaaaccctaaaccta 25030651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 29254586 - 29254530
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||| || | |||||||    
T  29254586 tgacaaacccttcttaaa-caaaccctcaacctaaactttatattggacctactttct 29254530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 17051447 - 17051294
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattg 154  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||  ||||||||||||    
T  17051447 ttttaataatgattagatgaaagtttgaaaggttaaaaagtttgaatttttaattgaaagaaaataacaataataataaaa-agtgtcttgggattattg 17051349  T
Q  155 gtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatat 209  Q
    || | ||    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  17051348 gttcatcttgatgacaaaaccttcacaaaccaaaccctaaacctaaactttatat 17051294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 2722668 - 2722537
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa---aagggtgctttgggattattgg 155  Q
    ||||||||||||||||||||||  ||| ||| ||| |||| |||||||||| ||||||||| | |||||||||||   || || || |||||||||||||    
T  2722668 aataatgattagatgagagttt--aagattataaagtttggatttttaattaaaagaaaataataataataataataaaaaggcgcattgggattattgg 2722571  T
Q  156 tccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    | ||||| | ||||||||| ||| |||| |||||    
T  2722570 ttcgtcataatgacaaacctttcacaaaccaaac 2722537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 3244438 - 3244502
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| |||||||||    
T  3244438 ttttaataatgattagatgaaagtttcgaaggttaaaaagtttggatttttaattaaaagaaaat 3244502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 47975522 - 47975443
Alignment:
Q  55 ttttaataatgattagat-gagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 133  Q
    |||||| ||||||||||| || |||||||||||| ||||| ||||||||||||||| ||||||||| | |||||||||||    
T  47975522 ttttaacaatgattagattgaaagtttcaaaggtcaaaaagtttgaatttttaattaaaagaaaataataataataataa 47975443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 3249569 - 3249631
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaa 117  Q
    |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| |||||||    
T  3249569 ttttaataatgattagatgaaagtttcgaaggttaaaaagtttggatttttaattaaaagaaa 3249631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 16034759 - 16034677
Alignment:
Q  108 ttgaaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||||||||||| |||||||||||||||| ||||  |||||||||||||| ||||| | ||||||||||||| |||| |||||    
T  16034759 ttgaaagaaaataacaataataataaaagaggtgtcttgggattattggttcgtcataatgacaaacccttcacaaaccaaac 16034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 1991543 - 1991480
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaa 118  Q
    |||||||||||||||||||| |||||| |||||| |||| |||| |||||||||| ||||||||    
T  1991543 ttttaataatgattagatgaaagtttcgaaggtttaaaagtttggatttttaattaaaagaaaa 1991480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 10607640 - 10607703
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  10607640 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 10607703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 16384814 - 16384878
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| |||||||||||||||||  || || |||||||||  ||||||||    
T  16384814 ttttaataatgattagatgaaagtttcaaaggttaaaagtttggattttttaattataagaaaat 16384878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 11826856 - 11826932
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaa 201  Q
    |||||||||||||| ||   ||||||||||||||| ||||  |||| ||||||||| ||||||||||| ||||||||||    
T  11826856 aataataataaaagagtc--ttgggattattggtcggtcatggtgataaacccttcacaaatcaaaccttaaacctaaa 11826932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 13418995 - 13418937
Alignment:
Q  165 gtgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||| || | |||||||    
T  13418995 gtgacaaacccttcacaaaccaaaccctatacctaaactttatattggacctactttct 13418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 26169643 - 26169696
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaatt 109  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  26169643 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaatt 26169696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 10601328 - 10601365
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaa 92  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10601328 ttttaataatgattagatgaaagtttcaaaggttaaaa 10601365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 11577184 - 11577269
Alignment:
Q  112 aagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||||| |||||||||||||    | |||||||||||||| |||||  | |||||| ||||| |||| |||||||||||||||    
T  11577184 aagaaaattactataataataaaagca--ccttgggattattggttcgtcatggcgacaaatccttcacaaaccaaaccctaaaccta 11577269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 34053020 - 34053099
Alignment:
Q  111 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    ||||||||| ||| |||||||||||| ||||  ||||| |||||||| ||||| | ||||||||||||| |||| |||||    
T  34053020 aaagaaaataacagtaataataaaagaggtgtcttggggttattggttcgtcataatgacaaacccttcacaaaccaaac 34053099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 8685311 - 8685373
Alignment:
Q  146 ggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    ||||||||||| |||||  |||||||| ||||| |||| ||||||||||||||| ||||||||    
T  8685311 ggattattggttcgtcatggtgacaaatccttcacaaaccaaaccctaaacctagaactttat 8685373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 11848314 - 11848388
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    |||||||||||||| |  | |||||||||||||| |||||  |||||||| ||||  |||| |||||||||||||||    
T  11848314 aataataataaaagcg--ccttgggattattggttcgtcatggtgacaaatccttaacaaaccaaaccctaaaccta 11848388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 17210183 - 17210131
Alignment:
Q  170 aaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    ||||||||| |||| |||||||||||||||||||||||||| || | |||||||    
T  17210183 aaacccttcacaaa-caaaccctaaacctaaactttatattggacctactttct 17210131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 22039440 - 22039383
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    ||||||| ||||| |||| |||||| ||||||||||||||||||| || | |||||||    
T  22039440 tgacaaaaccttcacaaaccaaaccataaacctaaactttatattggacctactttct 22039383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 36079772 - 36079674
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    ||||||||||||||||||||||   || ||| ||| |||| |||||||||| |||||||| || |||||||  ||||| | || |||||||||||||||     
T  36079772 aataatgattagatgagagttt--gagattataaagtttggatttttaattaaaagaaaa-tataataata--aaaagagagccttgggattattggtct 36079678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 27407858 - 27407769
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttatattaga 213  Q
    |||||||||||||| |  | ||| |||||||||||  |||  |||||||||||||| |||| |||||| |||||||| |||||||| |||||    
T  27407858 aataataataaaagag--ccttgagattattggtcgatcatggtgacaaacccttcacaaaccaaaccttaaacctagaactttatgttaga 27407769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 42243920 - 42243993
Alignment:
Q  59 aataatgattagat-gagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 133  Q
    |||||||||||||| |||||||| | |  ||||||| |||| ||||||||||||| |||||| | |||||||||||    
T  42243920 aataatgattagattgagagtttgaga--ttaaaaagtttggatttttaattgaatgaaaataataataataataa 42243993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 23341279 - 23341173
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattg 154  Q
    |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| || | ||||||||||||||||| ||||||||||||    
T  23341279 ttttaacaatgattagatgaaagtttcaaaggttaaaaattttggatttttaattgaaagaaaagta-actaataataaaagggtgccttgggattattg 23341181  T
Q  155 gtccgtca 162  Q
    ||||||||    
T  23341180 gtccgtca 23341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 20282840 - 20282776
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||| |||||||||    
T  20282840 ttttaataatgattagatgaaggtttcgaaggttaaaaagtttgaatttttaattaaaagaaaat 20282776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 21344000 - 21344068
Alignment:
Q  146 ggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttatattaga 213  Q
    |||| ||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  21344000 ggatcattggtccgtcatggtgacaaacccttctcaaatcaaaccttaaacctagaactttatgttaga 21344068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 16440428 - 16440345
Alignment:
Q  116 aaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    |||| ||||||||||||||| ||||| || |||||||||||  ||||  |||||||| ||||| |||| |||||||||||||||    
T  16440428 aaataacaataataataaaaaggtgccttaggattattggtttgtcatggtgacaaatccttcacaaaccaaaccctaaaccta 16440345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 21131502 - 21131587
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    ||||||||||||| || || |||||||||||||| | || |  ||||||||||||| |||| ||||||||||||||| ||||||||    
T  21131502 aataataataaaaaggcgccttgggattattggttcatctagatgacaaacccttcacaaaccaaaccctaaacctagaactttat 21131587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 23704903 - 23704835
Alignment:
Q  146 ggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttatattaga 213  Q
    ||||||||||| |||||  || ||||||||||||||||||||||| |||||||| |||||||| |||||    
T  23704903 ggattattggtacgtcatggtaacaaacccttctcaaatcaaaccttaaacctagaactttatgttaga 23704835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 20851 - 20939
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttatattaga 213  Q
    |||||||||||||| |  | ||||||| ||||||||||||  ||||||||||| |||||||||||||| |||| ||| |||||||| |||||    
T  20851 aataataataaaagag--ccttgggatcattggtccgtcatggtgacaaaccc-tctcaaatcaaaccttaaatctagaactttatgttaga 20939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 28496270 - 28496324
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaaccctt 177  Q
    |||||||||||||| | || ||||||| ||||||||||||  |||||||||||||    
T  28496270 aataataataaaagagagccttgggatcattggtccgtcatggtgacaaaccctt 28496324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 29576790 - 29576896
Alignment:
Q  124 ataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatc-aaaccctaaaccta-aactttatattagagcaacttt 221  Q
    ||||||||||||  | || |||||||||||||| | ||| | ||||||||||||| |||| | ||||| |||||||| |||||||| ||||| | |||||    
T  29576790 ataataataaaaaagagccttgggattattggttcatcataatgacaaacccttcacaaaccaaaaccttaaacctataactttatgttagacctacttt 29576889  T
Q  222 ctgatga 228  Q
    || ||||    
T  29576890 ctaatga 29576896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 19012473 - 19012537
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  |||||||| ||||| ||||||||| |||||||||| ||||||||    
T  19012473 ttgggattattggttcgtcatggtgacaaatccttcacaaatcaaa-cctaaacctagaactttat 19012537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 24365804 - 24365861
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaacctaaactttatattagagcaactttct 223  Q
    ||||||| | ||| |||| |||||||||||||||||||||||||| || | |||||||    
T  24365804 tgacaaaactttcccaaaccaaaccctaaacctaaactttatattggacctactttct 24365861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 24322422 - 24322366
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    |||||||||||||| | |||  |||||||| ||||| |||| |||||||||||||||    
T  24322422 ttgggattattggttcatcatggtgacaaatccttcacaaaccaaaccctaaaccta 24322366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 32440778 - 32440847
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataa 130  Q
    |||||||||||||||||||||| | |  ||| ||| |||| |||||||||| ||||||||| | ||||||||    
T  32440778 aataatgattagatgagagtttgata--ttataaagtttggatttttaattaaaagaaaataataataataa 32440847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 5487 - 5567
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaa 135  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||    
T  5487 ttttaataatgattagatgaaagtttcaaaggttaaaaaatttggatttttaattaaaagaaaataataataataataaaa 5567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 11902001 - 11902155
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||||| ||| | |  ||| ||| |||| |||||||| |||| |||||| ||||||||||||||| || || |||||||||||||| |    
T  11902001 aataatgattagatgagaatttgaga--ttataaagtttggatttttaactgaatgaaaataacaataataataaaaaggcgccttgggattattggttc 11902098  T
Q  159 gtcaaagtgacaaacccttctcaaatc-aaaccctaaaccta-aactttatattaga 213  Q
    |||| | ||||||||||||| |||| | ||||| |||||||| |||||||| |||||    
T  11902099 gtcataatgacaaacccttcacaaaccaaaaccttaaacctagaactttatgttaga 11902155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 10731780 - 10731691
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttatattaga 213  Q
    |||||||||||||| ||   ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  10731780 aataataataaaagagtc--ttgggattattggtccgtcatggtgacaaacccttctcaaatcaaaccttaaacctagaactttatgttaga 10731691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 10945549 - 10945460
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttatattaga 213  Q
    |||||||||||||| ||   ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  10945549 aataataataaaagagtc--ttgggattattggtccgtcatggtgacaaacccttctcaaatcaaaccttaaacctagaactttatgttaga 10945460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 11048984 - 11048920
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||  ||||||||    
T  11048984 ttttaataatgattagatgaaagtttcaaaggttaaaaagtttggatttttaattcgaagaaaat 11048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 8561753 - 8561836
Alignment:
Q  116 aaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    |||| ||||||||||||||| ||||| ||| |||||||||| |||||  |||||||| ||||| |||  |||||||||||||||    
T  8561753 aaataacaataataataaaaaggtgccttgagattattggttcgtcatggtgacaaatccttcacaatccaaaccctaaaccta 8561836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 9192846 - 9192801
Alignment:
Q  165 gtgacaaacccttctcaaatcaaaccctaaacctaaactttatatt 210  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||    
T  9192846 gtgacaaacccttcacaaaccaaaccctaaacctaaactttatatt 9192801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 11921907 - 11921972
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  |||||||||||||| |||| ||||||||||||||| ||||||||    
T  11921907 ttgggattattggttcgtcatggtgacaaacccttcacaaaccaaaccctaaacctataactttat 11921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 40559949 - 40560012
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    ||||||||||||| |||||| ||||||||||||| |||| |||| ||||||||||||||| ||||    
T  40559949 ttttaataatgatcagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaaggaaat 40560012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 10731896 - 10731824
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 133  Q
    |||||||||||||||||||||| | |  ||| ||| ||||||||||||||| ||||||||| | |||||||||||    
T  10731896 aataatgattagatgagagtttgaga--ttataaagtttgaatttttaattaaaagaaaataataataataataa 10731824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 10945665 - 10945593
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataa 133  Q
    |||||||||||||||||||||| | |  ||| ||| ||||||||||||||| ||||||||| | |||||||||||    
T  10945665 aataatgattagatgagagtttgaga--ttataaagtttgaatttttaattaaaagaaaataataataataataa 10945593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 5676096 - 5676038
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaa 201  Q
    |||| ||||||||| |||||  || ||||| ||||| ||||||||||||||||||||||    
T  5676096 ttggaattattggttcgtcatggtaacaaatccttcacaaatcaaaccctaaacctaaa 5676038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 7197885 - 7197831
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaaccctt 177  Q
    |||||||||||||| | || ||||||| ||||||||||||  |||||||||||||    
T  7197885 aataataataaaagagagccttgggatcattggtccgtcatggtgacaaaccctt 7197831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 25190828 - 25190753
Alignment:
Q  124 ataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaa 201  Q
    |||||||||||||  ||| |||||||||||||| | ||   |||||||| ||||| |||| |||||||||||||||||    
T  25190828 ataataataaaag--tgccttgggattattggttcatcttggtgacaaatccttcacaaaccaaaccctaaacctaaa 25190753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 11981 - 12045
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  11981 ttttaataatgattagatgaaagtttcaaaggttaaaaagtttgaatttttaattaaaagaaaat 12045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 15760290 - 15760162
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||||||||| | |  ||| ||| |||| |||||||| |||| |||||| ||||||||||||||| || |  |||||||||||||| |    
T  15760290 aataatgattagatgagagtttgaga--ttataaagtttggatttttaactgaatgaaaataacaataataataaaaaggcgtcttgggattattggttc 15760193  T
Q  159 gtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||| | ||||||||||||| |||| |||||    
T  15760192 gtcataatgacaaacccttcacaaaccaaac 15760162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 33633163 - 33633100
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    ||||||||||||| |||||| ||||||||||||| |||| |||| ||||||||||||||| ||||    
T  33633163 ttttaataatgatcagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaaggaaat 33633100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 25397662 - 25397534
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||||||||| | |  ||| ||| |||||||||||||   || |||||| ||||||||| ||||| || || ||||||||||||||      
T  25397662 aataatgattagatgagagtttgaga--ttataaagtttgaatttttaacataatgaaaataacaataatattaaaaaggcgccttgggattattggttt 25397565  T
Q  159 gtcaaagtgacaaacccttctcaaatcaaac 189  Q
     ||| | |||||||| |||| |||| |||||    
T  25397564 atcataatgacaaactcttcacaaaccaaac 25397534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 22285643 - 22285577
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||||||||||||| | || ||||||| ||||||||||||  |||||||||||||| |||| |||||    
T  22285643 aataataataaaagagagcattgggatcattggtccgtcatggtgacaaacccttcacaaaccaaac 22285577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 18008730 - 18008665
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||||| |||  |||||||||||||  |||| ||||||||||||||| ||||||||    
T  18008730 ttgggattattggtccatcatggtgacaaaccctttgcaaaccaaaccctaaacctagaactttat 18008665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 23694488 - 23694436
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaatt 109  Q
    |||||||||||||||||||| | |||||||||||  |||||||| ||||||||||    
T  23694488 ttttaataatgattagatgaaaatttcaaaggtt--aaaatttggatttttaatt 23694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 14877701 - 14877779
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaag 136  Q
    |||||||||||||||||||| ||||||||| |||  |||| ||| |||||||| | ||||||||| | ||||| ||||||||    
T  14877701 ttttaataatgattagatgaaagtttcaaaagtt--aaaagttggatttttaa-taaaagaaaataaaaataaaaataaaag 14877779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 21320052 - 21319970
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaacc-ctaaaccta-aactttatattagagcaactttct 223  Q
    |||||||||||||||| |||  |||||||||||||| |||| ||||||  |||||||| |||||||| ||||| | |||||||    
T  21320052 ttgggattattggtccatcatggtgacaaacccttcacaaaccaaacctttaaacctagaactttatgttagatctactttct 21319970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 42417935 - 42418001
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||||||||||||| | || ||||||| ||||||||||||   ||||||||||||| |||| |||||    
T  42417935 aataataataaaagagagccttgggatcattggtccgtcatgatgacaaacccttcacaaaccaaac 42418001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 18959887 - 18959829
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    ||||||||||||||||||||||  ||| ||| ||| |||| ||||||||||||| ||||||    
T  18959887 aataatgattagatgagagttt--aagattagaaagtttggatttttaattgaatgaaaat 18959829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 8210 - 8332
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||| | |||||||||||||||| |||| ||||||||||  ||||||||   ||||| |||||||  | |||||||||||||||||||    
T  8210 aataatgattagatgaaaatttcaaaggttaaaaagtttggatttttaatt--aagaaaat---aataaaaataaaa--gagctttgggattattggtcc 8302  T
Q  159 gtcaaagtgacaaacccttctcaaatcaaa 188  Q
    ||||  | |||||||||||| |||| ||||    
T  8303 gtcatggcgacaaacccttcacaaaccaaa 8332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 20915363 - 20915444
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaag 136  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||||||| | || || ||||||||    
T  20915363 ttttaataatgattaaatgaaagtttcaaaggttaaaaagtttgaatttttaattggaagaaaataataaaaaaaataaaag 20915444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 25577011 - 25577074
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| | || ||||||||||||||| ||||    
T  25577011 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtctggatttttaattgaaagtaaat 25577074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 34781037 - 34780974
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  34781037 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 34780974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 12411174 - 12411089
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    ||||||||||||| || || |||||||||||||| | ||    ||||||||||||| |||| ||||||||||||||| ||||||||    
T  12411174 aataataataaaaaggcgccttgggattattggttcatcttgatgacaaacccttcacaaaccaaaccctaaacctagaactttat 12411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 16677705 - 16677640
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  |||||||| ||||| |||| ||||||||||||||| ||||||||    
T  16677705 ttgggattattggttcgtcatggtgacaaatccttcacaaaccaaaccctaaacctagaactttat 16677640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 20167624 - 20167697
Alignment:
Q  116 aaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    |||| ||||||||||||||| ||||  ||||||||||||||||||||  | |||||| ||||| |||| |||||    
T  20167624 aaataacaataataataaaaaggtgtcttgggattattggtccgtcatggcgacaaatccttcacaaaccaaac 20167697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 20738947 - 20738902
Alignment:
Q  165 gtgacaaacccttctcaaatcaaaccctaaacctaaactttatatt 210  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||    
T  20738947 gtgacaaatccttcacaaaccaaaccctaaacctaaactttatatt 20738902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 21382926 - 21382859
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaacc 190  Q
    |||||||||||||| | || ||||||||||||||||||||  | |||||| ||||| |||| ||||||    
T  21382926 aataataataaaagagagccttgggattattggtccgtcatggcgacaaatccttcacaaaccaaacc 21382859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 21999945 - 22000024
Alignment:
Q  111 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    ||||||||| |||||||||||||||| ||||  || |||| |||||| |||||  |||||||||||||| |||| |||||    
T  21999945 aaagaaaataacaataataataaaagaggtgtcttaggatcattggttcgtcatggtgacaaacccttcacaaaccaaac 22000024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 20968444 - 20968407
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaa 92  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  20968444 ttttaataatgactagatgaaagtttcaaaggttaaaa 20968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 23435970 - 23435933
Alignment:
Q  125 taataataaaagggtgctttgggattattggtccgtca 162  Q
    |||||||||||||| || ||||||||||||||||||||    
T  23435970 taataataaaagggagccttgggattattggtccgtca 23435933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 23447337 - 23447300
Alignment:
Q  125 taataataaaagggtgctttgggattattggtccgtca 162  Q
    |||||||||||||| || ||||||||||||||||||||    
T  23447337 taataataaaagggagccttgggattattggtccgtca 23447300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 6128 - 6234
Alignment:
Q  103 tttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaac 202  Q
    ||||||| ||||||||| |||||||||| | ||  | || |||||||||||||| ||||| ||||||||  ||||| |||| ||||||||||||||||||    
T  6128 tttaattaaaagaaaataacaataataaaataatagcgccttgggattattggttcgtcatagtgacaattccttcacaaa-caaaccctaaacctaaac 6226  T
Q  203 tttatatt 210  Q
    ||||||||    
T  6227 tttatatt 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 17987285 - 17987221
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    ||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||| ||||||||    
T  17987285 ttttaataatgattagatgaatgtttcaaaggttaaaaagtttggatttttaattggaagaaaat 17987221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 21240778 - 21240636
Alignment:
Q  59 aataatgattagat-gagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtc 157  Q
    |||||||||||| | || |||||||||||||||||| |||| ||||||  || || |||||| ||||||||||||||| || || ||||||||||||||     
T  21240778 aataatgattagtttgaaagtttcaaaggttaaaaagtttggatttttgttttaa-gaaaataacaataataataaaaaggcgccttgggattattggtt 21240680  T
Q  158 cgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaa 201  Q
    | ||    |||||||| |||| |||| |||| ||||||||||||    
T  21240679 catcttgatgacaaactcttcacaaaccaaatcctaaacctaaa 21240636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 18379595 - 18379659
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| |||||||||| ||| |||||    
T  18379595 ttttaataatgattagatgaaagtttcaaagattaaaaagtttggatttttaattaaaacaaaat 18379659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 41229008 - 41228946
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaa 118  Q
    ||||||||||||||| |||| ||||||||||||| |||| |||| |||||||||||||||||||    
T  41229008 ttttaataatgattaaatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaagaaaa 41228946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 41802973 - 41802853
Alignment:
Q  63 atgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtca 162  Q
    |||||||||||| |||||||||||||||||| |||  ||||||||||  ||||||||   ||||| |||||||  | || ||||||||||||||||||||    
T  41802973 atgattagatgaaagtttcaaaggttaaaaagttttgatttttaatt--aagaaaat---aataaaaataaaa--gagccttgggattattggtccgtca 41802881  T
Q  163 aagtgacaaacccttctcaaatcaaacc 190  Q
      | |||||| ||||| |||| ||||||    
T  41802880 tggcgacaaatccttcacaaaccaaacc 41802853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 39286041 - 39286114
Alignment:
Q  111 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaa 183  Q
    ||||||||| |||||||||||||||| ||||  ||||||||||||||||||||  |||||||| ||||| ||||    
T  39286041 aaagaaaataacaataataataaaagaggtgtcttgggattattggtccgtcatggtgacaaatccttcacaaa 39286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 23289364 - 23289423
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||  ||||||||    
T  23289364 aataatgattagatgaaagtttcaaaggtt-aaaagtttgaatttttaattataagaaaat 23289423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 17717472 - 17717344
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtcc 158  Q
    |||||||||||||||||||||| | |  ||| |||  ||| ||||||||   || |||||| ||||||||||||||| ||||  || |||| ||||||||    
T  17717472 aataatgattagatgagagtttgaga--ttataaaggttggatttttaacataatgaaaataacaataataataaaaaggtgtctttggatcattggtcc 17717375  T
Q  159 gtcaaagtgacaaacccttctcaaatcaaac 189  Q
    ||||  |||||||| ||||| |||| |||||    
T  17717374 gtcatggtgacaaatccttcacaaaccaaac 17717344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 8649545 - 8649471
Alignment:
Q  115 aaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaa 188  Q
    ||||| |||||||||||||||| ||||  ||||||| ||||||||||||  |||||||||||||| |||| ||||    
T  8649545 aaaataacaataataataaaagaggtgtcttgggatcattggtccgtcatggtgacaaacccttcacaaaccaaa 8649471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 49056072 - 49056014
Alignment:
Q  166 tgacaaacccttctcaaatcaaaccctaaacct-aaactttatattagagcaactttct 223  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| || | |||||||    
T  49056072 tgacaaacccttcacaaatcaaaccctaaacctaaaactttatattggacctactttct 49056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 44538914 - 44538852
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| | |||||||||||  |||| ||| |||||||||| |||||||||    
T  44538914 ttttaataatgattagatgaaaatttcaaaggtt--aaaagttggatttttaattaaaagaaaat 44538852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 20405428 - 20405365
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  20405428 ttttaacaatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 20405365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 20412962 - 20412893
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaattacaataataa 130  Q
    ||||||||||||||||||||||   || |||| || |||| |||||||||| ||||||||| ||||||||||    
T  20412962 aataatgattagatgagagttt--gagattaagaagtttggatttttaattaaaagaaaataacaataataa 20412893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 28208531 - 28208464
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaacc 190  Q
    ||||||||||||| ||||| ||| |||||||||| |||||   ||||||| |||||||||| ||||||    
T  28208531 aataataataaaaaggtgccttgagattattggttcgtcatgatgacaaatccttctcaaaccaaacc 28208464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 20498183 - 20498118
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| | |||  |||||||| ||||| |||| ||||||||||||||| ||||||||    
T  20498183 ttgggattattggttcttcatggtgacaaatccttcacaaaccaaaccctaaacctagaactttat 20498118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 20860157 - 20860222
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| ||| | ||||||||| ||||| |||| ||||||||||| ||| ||||||||    
T  20860157 ttgggattattggttcgtgatagtgacaaatccttcacaaaccaaaccctaaatctagaactttat 20860222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 23299512 - 23299459
Alignment:
Q  146 ggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||||| |||||  |||||||| ||||| |||| |||||||||||||||    
T  23299512 ggattattggttcgtcatggtgacaaatccttcacaaaccaaaccctaaaccta 23299459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 25404542 - 25404607
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  || ||||| ||||| |||| ||||||||||||||| ||||||||    
T  25404542 ttgggattattggttcgtcatggttacaaatccttcacaaaccaaaccctaaacctagaactttat 25404607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 24621 - 24684
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| || | ||||||||||||||||||||    
T  24621 ttttaataatgattagatgaaagtttcaaaggtt-aaaagttcggatttttaattgaaagaaaat 24684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 21184 - 21121
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||| ||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||    
T  21184 ttttaataataattagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaagaaaat 21121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 53524 - 53461
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||| ||||    
T  53524 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattgaaaggaaat 53461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 142 - 79
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  142 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 79  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 27660 - 27723
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  27660 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 27723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 51133 - 51192
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||| ||||||||||||| |||| |||| |||||||||| |||||||||    
T  51133 aataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattaaaagaaaat 51192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 13701 - 13764
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||  ||||||||    
T  13701 ttttaataatgattagatgaaagtttcaaaggtt-aaaagtttggatttttaattataagaaaat 13764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 100886 - 100753
Alignment:
Q  85 ggttaaaaaatttgaatttttaattgaaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaat 184  Q
    ||||| ||| |||| |||||||||| |||||||||   ||||| ||||||| |  || |||||||||||||| | ||  | ||||||||| |||  |||     
T  100886 ggttataaagtttggatttttaattaaaagaaaat---aataaaaataaaaaga-gccttgggattattggttcatcttaatgacaaaccattca-aaac 100792  T
Q  185 caaaccctaaacctaaactttatattagagcaactttct 223  Q
    |||||| ||||||||||||||||||| || | |||||||    
T  100791 caaaccataaacctaaactttatattggacctactttct 100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 8261 - 8340
Alignment:
Q  111 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    ||||||||| |||||||||||||||| ||||  ||||||| ||||||| ||||  |||||||||||||| |||| |||||    
T  8261 aaagaaaataacaataataataaaagaggtgtcttgggatcattggtctgtcatggtgacaaacccttcacaaaccaaac 8340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 23932 - 23853
Alignment:
Q  111 aaagaaaattacaataataataaaag-ggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaac 189  Q
    ||||||||| |||||||||||||||| ||||  ||||||  ||||||||||||  |||||||||||||| |||| |||||    
T  23932 aaagaaaataacaataataataaaagaggtgtcttgggaccattggtccgtcatggtgacaaacccttcacaaaccaaac 23853  T

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Target: scaffold0251 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 18294 - 18331
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaa 92  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18294 ttttaataatgattagatgaaagtttcaaaggttaaaa 18331  T

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Target: scaffold0125 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 43372 - 43335
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaa 92  Q
    |||||||||||||||||||| |||||||||||||||||    
T  43372 ttttaataatgattagatgaaagtttcaaaggttaaaa 43335  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 521381 - 521313
Alignment:
Q  140 gctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    ||||||||||||||||| | ||   |||||||||||||| |||| ||||||||||||||| ||||||||    
T  521381 gctttgggattattggttcatcttggtgacaaacccttcacaaaccaaaccctaaacctataactttat 521313  T

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Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 182055 - 182118
Alignment:
Q  55 ttttaataatgattagatgagagtttcaaaggttaaaaaatttgaatttttaattgaaagaaaat 119  Q
    |||||||||||| || |||| |||||||||| || |||| |||| ||||||||||||||| ||||    
T  182055 ttttaataatgaatatatgaaagtttcaaagatt-aaaagtttggatttttaattgaaaggaaat 182118  T

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Target: scaffold0098 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 43743 - 43817
Alignment:
Q  116 aaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaacc 190  Q
    |||| ||||||||||||||| ||||  |||||||||||||| | |||  |||||||| ||||| |||| ||||||    
T  43743 aaataacaataataataaaaaggtgtcttgggattattggttcatcatggtgacaaatccttcacaaaccaaacc 43817  T

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Target: scaffold0443 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 3905 - 3990
Alignment:
Q  123 aataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||  | || |||||||||||||| | || |  |||||||||||||  ||| ||||||||||||||| ||||||||    
T  3905 aataataataaaaaagcgcattgggattattggttcatctagatgacaaacccttcataaaccaaaccctaaacctagaactttat 3990  T

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Target: scaffold0362 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 8655 - 8763
Alignment:
Q  114 gaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaacctaaactttatattaga 213  Q
    |||||| |||||||||| | ||  | || |||||||||||||| | ||  | |||||||||||||  ||| |||| ||||||||||||||||||||| ||    
T  8655 gaaaataacaataataaaataaaagcgccttgggattattggttcatcttaatgacaaacccttcaaaaa-caaatcctaaacctaaactttatattgga 8753  T
Q  214 gcaactttct 223  Q
     | |||||||    
T  8754 cctactttct 8763  T

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Target: scaffold0213 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 15973 - 15940
Alignment:
Q  59 aataatgattagatgagagtttcaaaggttaaaa 92  Q
    |||||||||||||||| |||||||||||||||||    
T  15973 aataatgattagatgaaagtttcaaaggttaaaa 15940  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 14709 - 14644
Alignment:
Q  143 ttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta-aactttat 207  Q
    |||||||||||||| |||||  |||||||| ||||| |||| |||| |||||||||| ||||||||    
T  14709 ttgggattattggttcgtcatggtgacaaatccttcacaaaccaaatcctaaacctagaactttat 14644  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 22169 - 22255
Alignment:
Q  111 aaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||| |||||||| ||||||| |  | |||||||||||||| |||||  |||||||| ||||| |||   ||||||||||||||    
T  22169 aaagaaaataacaataattataaaagag--ccttgggattattggttcgtcatggtgacaaatccttcacaagcaaaaccctaaaccta 22255  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 31773 - 31687
Alignment:
Q  111 aaagaaaattacaataataataaaagggtgctttgggattattggtccgtcaaagtgacaaacccttctcaaatcaaaccctaaaccta 199  Q
    ||||||||| ||||||| |||||||| ||   |||||||||||||| |||||   | ||||| ||||| |||||||||| |||||||||    
T  31773 aaagaaaataacaataacaataaaagtgtc--ttgggattattggttcgtcatgataacaaatccttcacaaatcaaactctaaaccta 31687  T

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