View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_179 (Length: 241)
Name: NF9612A_low_179
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_179 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 1516940 - 1517162
Alignment:
| Q |
13 |
ttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggc |
112 |
Q |
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| T |
1516940 |
ttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggc |
1517039 |
T |
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| Q |
113 |
ttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatata |
212 |
Q |
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| T |
1517040 |
ttataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatata |
1517139 |
T |
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| Q |
213 |
ggctagctacggctcatcttgtg |
235 |
Q |
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| T |
1517140 |
ggctagctacggctcatcttgtg |
1517162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 2908273 - 2908497
Alignment:
| Q |
13 |
ttctccatcatggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatg |
110 |
Q |
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|||||| | |||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
2908273 |
ttctccgttatggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaagtgatttgaggtatgcttcctaccactatg |
2908372 |
T |
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| Q |
111 |
gcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcata |
210 |
Q |
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| T |
2908373 |
gtttataatattattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagtcggcata |
2908472 |
T |
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| Q |
211 |
taggctagctacggctcatcttgtg |
235 |
Q |
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|||||||| || |||||| ||||| |
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| T |
2908473 |
taggctagttatcgctcattttgtg |
2908497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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