View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9612A_low_18 (Length: 415)
Name: NF9612A_low_18
Description: NF9612A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9612A_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 17109379 - 17109751
Alignment:
| Q |
20 |
catcagtggtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatt |
119 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17109379 |
catcagtggtggctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataagtgtattaatttcgaaatgatt |
17109478 |
T |
|
| Q |
120 |
tcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17109479 |
tcacaggaaaatgaacatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttc |
17109578 |
T |
|
| Q |
220 |
agcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109579 |
agcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtcc |
17109678 |
T |
|
| Q |
320 |
acaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaac |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109679 |
acaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaac |
17109751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 16978055 - 16978385
Alignment:
| Q |
28 |
gtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacagga |
127 |
Q |
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||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||| |
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| T |
16978055 |
gtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacagga |
16978154 |
T |
|
| Q |
128 |
aaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttt |
227 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| |
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| T |
16978155 |
aaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacacttt |
16978254 |
T |
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| Q |
228 |
tatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattgg |
327 |
Q |
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|| |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||| |||| |
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| T |
16978255 |
gatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttgg |
16978354 |
T |
|
| Q |
328 |
tgtccttctccgctagaggtttgccttcaag |
358 |
Q |
| |
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||| ||||||| | |||||||||| ||||| |
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| T |
16978355 |
agtcgttctccgatggaggtttgccatcaag |
16978385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 17029927 - 17030257
Alignment:
| Q |
28 |
gtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacagga |
127 |
Q |
| |
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||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||| |
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| T |
17029927 |
gtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacagga |
17030026 |
T |
|
| Q |
128 |
aaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttt |
227 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| |
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| T |
17030027 |
aaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacacttt |
17030126 |
T |
|
| Q |
228 |
tatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattgg |
327 |
Q |
| |
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|| |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| |
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| T |
17030127 |
gatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttgg |
17030226 |
T |
|
| Q |
328 |
tgtccttctccgctagaggtttgccttcaag |
358 |
Q |
| |
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||| ||||||| | |||||||||| ||||| |
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| T |
17030227 |
agtcgttctccgatggaggtttgccatcaag |
17030257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 17048265 - 17048595
Alignment:
| Q |
28 |
gtagctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacagga |
127 |
Q |
| |
|
||||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||| |
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| T |
17048265 |
gtagctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacagga |
17048364 |
T |
|
| Q |
128 |
aaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttt |
227 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| |
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| T |
17048365 |
aaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacacttt |
17048464 |
T |
|
| Q |
228 |
tatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattgg |
327 |
Q |
| |
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|| |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| |
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| T |
17048465 |
gatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttgg |
17048564 |
T |
|
| Q |
328 |
tgtccttctccgctagaggtttgccttcaag |
358 |
Q |
| |
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||| ||||||| | |||||||||| ||||| |
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| T |
17048565 |
agtcgttctccgatggaggtttgccatcaag |
17048595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 17024324 - 17024395
Alignment:
| Q |
90 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
161 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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|
| T |
17024324 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17024395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
249 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
292 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 17035086 - 17035157
Alignment:
| Q |
90 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
161 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
17035086 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
249 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
292 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 17089596 - 17089667
Alignment:
| Q |
90 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
161 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
17089596 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17089667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
249 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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